Evidence map›Paper›PMID 39623311›Full record

ArticleBMC gastroenterology2024

Epidermal Growth Factor Receptor (EGFR) and SMAD4 negatively correlated in the progression of gallbladder cancer in Eastern Indian patients.

Sounetra Choudhury, Sandip Ghosh, Prosenjeet Chakraborty, Sayari Pal, Koustuv Ghosh, Subhankar Saha, Jitesh Midha, Vinu Sankar, Abhisek Mohata, Bitan Kumar Chattopadhyay and 4 more

Abstract read
In one paragraph

Article in BMC gastroenterology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Sounetra ChoudhuryHuman Genetics Unit, Indian Statistical Institute, 203, B. T. Road, Kolkata, 700108, India.
Sandip GhoshDepartment of Neuroendocrinology and Experimental Hematology, Chittaranjan National Cancer Research Institute, Kolkata, India.
Prosenjeet ChakrabortyHuman Genetics Unit, Indian Statistical Institute, 203, B. T. Road, Kolkata, 700108, India.
Sayari PalHuman Genetics Unit, Indian Statistical Institute, 203, B. T. Road, Kolkata, 700108, India.
Koustuv GhoshHuman Genetics Unit, Indian Statistical Institute, 203, B. T. Road, Kolkata, 700108, India.
Subhankar SahaDepartment of General Surgery, Medical College and Hospital, Kolkata, India.
Jitesh MidhaDepartment of General Surgery, SSKM Hospital and IPGME&R, Kolkata, India.
Vinu SankarDepartment of General Surgery, Medical College and Hospital, Kolkata, India.
Abhisek MohataDepartment of General Surgery, Medical College and Hospital, Kolkata, India.
Bitan Kumar ChattopadhyayDepartment of General Surgery, SSKM Hospital and IPGME&R, Kolkata, India.
Shibajyoti GhoshDepartment of General Surgery, Medical College and Hospital, Kolkata, India.
Soumen DasDepartment of General Surgery, SSKM Hospital and IPGME&R, Kolkata, India.
Biswarup BasuDepartment of Neuroendocrinology and Experimental Hematology, Chittaranjan National Cancer Research Institute, Kolkata, India.
Nilabja SikdarHuman Genetics Unit, Indian Statistical Institute, 203, B. T. Road, Kolkata, 700108, India. snilabja@isical.ac.in.

Funding

Department of Biotechnology, Government of West Bengal,India RD-37-2016
6 · The paper itself

Abstract

BACKGROUND AND

introductionTwo and half percent of the Indian population suffer from gallbladder cancer (GBC). The primary factors that lead GBC are associated with mutation of several protooncogenes such as EGFR, ERBB2, Myc, and CCND1 along with dysregulation of several tumor suppressor genes such as SMAD4 and CDKN2A. Bacterial infection caused by S.typhi and H.pylori are also hypothesized to be potential factors driving GBC.

aimsThis study aims to investigate the molecular mechanisms driving the progression of gallbladder adenocarcinoma in Eastern Indian patients. We specifically focussed on analyzing the mutational status of the KRAS gene, examining the amplification of the ERBB2/Her2-neu gene, and evaluating the expression patterns of six dysregulated genes (CCND1, MYC, EGFR, ERBB2/Her2-neu, CDKN2A, SMAD4). Additionally, we assessed the expression status of TGF-beta, the association between bacterial infections (S. Typhi and H. pylori) and GBC, and the impact of single nucleotide polymorphisms in ERBB2/Her2-neu and CCND1 genes within this population.

methodsSixty-seven samples from GBC-diagnosed patients, 26 other unrelated GBC samples for validation cohort, and 68 gallstone tissue samples were collected for this study. Genomic DNA from normal as well as tumor tissues were isolated, exon 2 and exon 3 of KRAS gene were amplified along, DNA sequenced and analyzed. KRAS codon 12 mutation was detected by allele specific PCR (ASPCR) method. Amplification of UreC A (coding for urease subunit α), VacA (coding for Vacuolating cytotoxin A) and CagA genes (coding for cytotoxin-associated gene A) in H.pylori were amplified using PCR. Similarly, FlicC (coding for flagellin gene C) in S.typhi was amplified using PCR. The ERBB2/Her2-neu SNP I655V, and CCND1 SNP A870G were analyzed using PCR followed by RFLP. Expression studies of CCND1, Myc, CDKN2A, ERBB2/Her2-neu, EGFR, and SMAD4 genes were measured in GBC tumor tissues by sybr green quantitative RT PCR.

resultsThe oncogenes (EGFR and ERBB2/Her2-neu) were statistically significantly overexpressed and the tumor suppressor gene (SMAD4) downregulated in our GBC tumor patient samples. The EGFR and SMAD4 genes were negatively correlated (r = -0.01) in GBC patients and the data is statistically significant and validated through IHC technique. A significant downregulation of TGF-beta had also been observed. Lower frequency (i.e. 11.5%) of KRAS mutation in GBC tumor was observed.

conclusionsEGFR and SMAD4 expression were found to be negatively correlated in GBC tissue samples. ERBB2 overexpression/amplification was observed in 30% of the GBC samples. We also found a low percentage of GBC samples to show KRAS codon 12 mutation in Indian GBC patient population, as had been previously documented in pancreatic cancers.

Indexed as

Cyclin D1Disease ProgressionErb-b2 Receptor Tyrosine KinasesErbB ReceptorsGallbladder NeoplasmsProto-Oncogene Proteins p21(ras)Smad4 ProteinAdenocarcinomaAdultAgedCyclin-Dependent Kinase Inhibitor p16FemaleGene Expression Regulation, NeoplasticHelicobacter InfectionsHumansIndiaCCND1 protein, humanCDKN2A protein, humanCyclin D1Cyclin-Dependent Kinase Inhibitor p16EGFR protein, humanERBB2 protein, humanErb-b2 Receptor Tyrosine KinasesErbB ReceptorsKRAS protein, humanProto-Oncogene Proteins p21(ras)Smad4 ProteinSMAD4 protein, humanTransforming Growth Factor betaBacterial infectionEGFR-SMAD4 expression correlationERBB2 amplificationGallbladder cancerKRAS mutation

Identifiers

PMID39623311
PMCPMC11613908

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.