Evidence map›Paper›PMID 39623209›Full record

ArticleNature plants2025

Regulation and function of a polarly localized lignin barrier in the exodermis.

Concepcion Manzano, Kevin W Morimoto, Lidor Shaar-Moshe, G Alex Mason, Alex Cantó-Pastor, Mona Gouran, Damien De Bellis, Robertas Ursache, Kaisa Kajala, Neelima Sinha and 4 more

Abstract read
In one paragraph

Article in Nature plants, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Concepcion ManzanoDepartment of Plant Biology and Genome Center, University of California Davis, Davis, CA, USA. cmanzano@ucdavis.edu.ORCID 0000-0003-1592-5068
Kevin W MorimotoDepartment of Plant Biology and Genome Center, University of California Davis, Davis, CA, USA.ORCID 0000-0002-9690-0411
Lidor Shaar-MosheDepartment of Plant Biology and Genome Center, University of California Davis, Davis, CA, USA.
G Alex MasonDepartment of Plant Biology and Genome Center, University of California Davis, Davis, CA, USA.
Alex Cantó-PastorDepartment of Plant Biology and Genome Center, University of California Davis, Davis, CA, USA.ORCID 0000-0001-8571-1116
Mona GouranDepartment of Plant Biology and Genome Center, University of California Davis, Davis, CA, USA.
Damien De BellisDepartment of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland.ORCID 0000-0001-9480-7208
Robertas UrsacheDepartment of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland.
Kaisa KajalaDepartment of Plant Biology and Genome Center, University of California Davis, Davis, CA, USA.ORCID 0000-0001-6483-7473
Neelima SinhaCenter for Plant Cell Biology, Department of Botany and Plant Sciences, University of California Riverside, Riverside, CA, USA.ORCID 0000-0002-1494-7065
Julia Bailey-SerresDepartment of Plant Biology, University of California Davis, Davis, CA, USA.ORCID 0000-0002-8568-7125
Niko GeldnerDepartment of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland.ORCID 0000-0002-2300-9644
J Carlos Del PozoCentro de Biotecnología y Genómica de Plantas (UPM-INIA/CSIC), Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria-CSIC (INIA/CSIC), Campus Montegancedo, Madrid, Spain.
Siobhan M BradyDepartment of Plant Biology and Genome Center, University of California Davis, Davis, CA, USA. sbrady@ucdavis.edu.ORCID 0000-0001-9424-8055

Funding

EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 655406EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 700057European Molecular Biology Organization (EMBO) Long-term Fellowship ALTF 1046-2015Howard Hughes Medical Institute (HHMI) 55108506Howard Hughes Medical Institute (HHMI) HHMI 55108506Human Frontier Science Program (HFSP) RGP0067/2021National Science Foundation (NSF) NSF 2118017National Science Foundation (NSF) PGRP IOS-1856749National Science Foundation (NSF) PGRP IOS-211980National Science Foundation (NSF) PRFB IOS-1907008United States - Israel Binational Agricultural Research and Development Fund (BARD) FI-570-2018
6 · The paper itself

Abstract

Multicellular organisms control environmental interactions through specialized barriers in specific cell types. A conserved barrier in plant roots is the endodermal Casparian strip (CS), a ring-like structure made of polymerized lignin that seals the endodermal apoplastic space. Most angiosperms have another root cell type, the exodermis, that is reported to form a barrier. Our understanding of exodermal developmental and molecular regulation and function is limited as this cell type is absent from Arabidopsis thaliana. We demonstrate that in tomato (Solanum lycopersicum), the exodermis does not form a CS. Instead, it forms a polar lignin cap (PLC) with equivalent barrier function to the endodermal CS but distinct genetic control. Repression of the exodermal PLC in inner cortical layers is conferred by the SlSCZ and SlEXO1 transcription factors, and these two factors genetically interact to control its polar deposition. Several target genes that act downstream of SlSCZ and SlEXO1 in the exodermis are identified. Although the exodermis and endodermis produce barriers that restrict mineral ion uptake, the exodermal PLC is unable to fully compensate for the lack of a CS. The presence of distinct lignin structures acting as apoplastic barriers has exciting implications for a root's response to abiotic and biotic stimuli.

Indexed as

LigninPlant RootsSolanum lycopersicumArabidopsisGene Expression Regulation, PlantPlant ProteinsTranscription FactorsLigninPlant ProteinsTranscription Factors

Identifiers

PMID39623209
PMCPMC11757151

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.