Evidence map›Paper›PMID 39623082›Full record

ArticleCommunications biology2024

Identification of responsible sequences which mutations cause maternal H19-ICR hypermethylation with Beckwith-Wiedemann syndrome-like overgrowth.

Satoshi Hara, Fumikazu Matsuhisa, Shuji Kitajima, Hitomi Yatsuki, Musashi Kubiura-Ichimaru, Ken Higashimoto, Hidenobu Soejima

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Satoshi HaraDivision of Molecular Genetics and Epigenetics, Department of Biomolecular Sciences, Faculty of Medicine, Saga University, Saga, 849-8501, Japan. shara@cc.saga-u.ac.jp.ORCID 0009-0003-7499-4773
Fumikazu MatsuhisaDivision of Biological Resources and Development, Analytical Research Center for Experimental Sciences, Saga University, Saga, 849-8501, Japan.
Shuji KitajimaDivision of Biological Resources and Development, Analytical Research Center for Experimental Sciences, Saga University, Saga, 849-8501, Japan.
Hitomi YatsukiDivision of Molecular Genetics and Epigenetics, Department of Biomolecular Sciences, Faculty of Medicine, Saga University, Saga, 849-8501, Japan.
Musashi Kubiura-IchimaruDivision of Molecular Genetics and Epigenetics, Department of Biomolecular Sciences, Faculty of Medicine, Saga University, Saga, 849-8501, Japan.
Ken HigashimotoDivision of Molecular Genetics and Epigenetics, Department of Biomolecular Sciences, Faculty of Medicine, Saga University, Saga, 849-8501, Japan.
Hidenobu SoejimaDivision of Molecular Genetics and Epigenetics, Department of Biomolecular Sciences, Faculty of Medicine, Saga University, Saga, 849-8501, Japan. soejimah@cc.saga-u.ac.jp.ORCID 0000-0001-5076-6563

Funding

Japan Agency for Medical Research and Development (AMED) JP22ek0109587Japan Agency for Medical Research and Development (AMED) JP23ek0109674Japan Agency for Medical Research and Development (AMED) JP23ek019672MEXT | Japan Society for the Promotion of Science (JSPS) JP20H03643MEXT | Japan Society for the Promotion of Science (JSPS) JP21K19451MEXT | Japan Society for the Promotion of Science (JSPS) JP22KK0111MEXT | Japan Society for the Promotion of Science (JSPS) JP23K05592MEXT | Japan Society for the Promotion of Science (JSPS) JP23K07251MEXT | Japan Society for the Promotion of Science (JSPS) JP24K02422Ministry of Health, Labour and Welfare (Ministry of Health, Labour and Welfare, Japan) 23FC1052
6 · The paper itself

Abstract

Beckwith-Wiedemann syndrome (BWS) is caused by a gain of methylation (GOM) at the imprinting control region within the Igf2-H19 domain on the maternal allele (H19-ICR GOM). Mutations in the binding sites of several transcription factors are involved in H19-ICR GOM and BWS. However, the responsible sequence(s) for H19-ICR GOM with BWS-like overgrowth has not been identified in mice. Here, we report that a mutation in the SOX-OCT binding site (SOBS) causes partial H19-ICR GOM, which does not extend beyond CTCF binding site 3 (CTS3). Moreover, simultaneously mutating both SOBS and CTS3 causes complete GOM of the entire H19-ICR, leading to the misexpression of the imprinted genes, and frequent BWS-like overgrowth. In addition, CTS3 is critical for CTCF/cohesin-mediated chromatin conformation. These results indicate that SOBS and CTS3 are the sequences in which mutations cause H19-ICR GOM leading to BWS-like overgrowth and are essential for maintaining the unmethylated state of maternal H19-ICR.

Indexed as

Beckwith-Wiedemann SyndromeDNA MethylationGenomic ImprintingMutationRNA, Long NoncodingAnimalsBinding SitesCCCTC-Binding FactorFemaleInsulin-Like Growth Factor IIMaleMiceCCCTC-Binding FactorH19 long non-coding RNAInsulin-Like Growth Factor IIRNA, Long Noncoding

Identifiers

PMID39623082
PMCPMC11612015

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.