Evidence map›Paper›PMID 39622841›Full record

ArticleNature communications2024

An autonomous microbial sensor enables long-term detection of TNT explosive in natural soil.

Erin A Essington, Grace E Vezeau, Daniel P Cetnar, Emily Grandinette, Terrence H Bell, Howard M Salis

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Programming Next-Generation Synthetic Biosensors by Genetic Circuit Design.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  5. Article
  6. Review
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  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Erin A EssingtonDepartment of Chemical Engineering, The Pennsylvania State University, University Park, PA, USA.ORCID 0000-0001-9257-5538
Grace E VezeauDepartment of Biological Engineering, The Pennsylvania State University, University Park, PA, USA.
Daniel P CetnarDepartment of Chemical Engineering, The Pennsylvania State University, University Park, PA, USA.
Emily GrandinetteDepartment of Plant Pathology and Environmental Microbiology, The Pennsylvania State University, University Park, PA, USA.
Terrence H BellDepartment of Physical and Environmental Sciences, University of Toronto, Toronto, Canada.ORCID 0000-0003-3603-7270
Howard M SalisDepartment of Chemical Engineering, The Pennsylvania State University, University Park, PA, USA. salis@psu.edu.ORCID 0000-0003-0411-4390

Funding

National Science Foundation (NSF) MCB-2131923United States Department of Defense | Defense Advanced Research Projects Agency (DARPA) HR00111920021
6 · The paper itself

Abstract

Microbes can be engineered to sense target chemicals for environmental and geospatial detection. However, when engineered microbes operate in real-world environments, it remains unclear how competition with natural microbes affect their performance over long time periods. Here, we engineer sensors and memory-storing genetic circuits inside the soil bacterium Bacillus subtilis to sense the TNT explosive and maintain a long-term response, using predictive models to design riboswitch sensors, tune transcription rates, and improve the genetic circuit's dynamic range. We characterize the autonomous microbial sensor's ability to detect TNT in a natural soil system, measuring single-cell and population-level behavior over a 28-day period. The autonomous microbial sensor activates its response by 14-fold when exposed to low TNT concentrations and maintains stable activation for over 21 days, exhibiting exponential decay dynamics at the population-level with a half-life of about 5 days. Overall, we show that autonomous microbial sensors can carry out long-term detection of an important chemical in natural soil with competitive growth dynamics serving as additional biocontainment.

Indexed as

Bacillus subtilisSoil MicrobiologyTrinitrotolueneBiosensing TechniquesExplosive AgentsGene Regulatory NetworksRiboswitchSoilSoil PollutantsExplosive AgentsRiboswitchSoilSoil PollutantsTrinitrotoluene

Identifiers

PMID39622841
PMCPMC11612163

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.