Evidence map›Paper›PMID 39622625›Full record

ArticleACS synthetic biology2024

A Biomolecular Circuit for Automatic Gene Regulation in Mammalian Cells with CRISPR Technology.

Alessio Mallozzi, Virginia Fusco, Francesco Ragazzini, Diego di Bernardo

Abstract read
In one paragraph

Article in ACS synthetic biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Alessio MallozziTelethon Institute of Genetics and Medicine, 80078 Naples, Italy.
Virginia FuscoTelethon Institute of Genetics and Medicine, 80078 Naples, Italy.
Francesco RagazziniTelethon Institute of Genetics and Medicine, 80078 Naples, Italy.
Diego di BernardoTelethon Institute of Genetics and Medicine, 80078 Naples, Italy.ORCID 0000-0002-1911-7407

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We introduce a biomolecular circuit for precise control of gene expression in mammalian cells. The circuit leverages the stochiometric interaction between the artificial transcription factor VPR-dCas9 and the anti-CRISPR protein AcrIIA4, enhanced with synthetic coiled-coil domains to boost their interaction, to maintain the expression of a reporter protein constant across diverse experimental conditions, including fluctuations in protein degradation rates and plasmid concentrations, by automatically adjusting its mRNA level. This capability, known as robust perfect adaptation (RPA), is crucial for the stable functioning of biological systems and has wide-ranging implications for biotechnological applications. This system belongs to a class of biomolecular circuits named antithetic integral controllers, and it can be easily adapted to regulate any endogenous transcription factor thanks to the versatility of the CRISPR-Cas system. Finally, we show that RPA also holds in cells genomically integrated with the circuit, thus paving the way for practical applications in biotechnology that require stable cell lines.

Indexed as

CRISPR-Cas SystemsAnimalsGene Expression RegulationGene Regulatory NetworksHEK293 CellsHumansPlasmidsTranscription FactorsTranscription Factorsbiomedical engineeringbiomolecular circuitcontrol engineeringCRISPR-casgene expressionmammalian

Identifiers

PMID39622625
PMCPMC11669156

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.