Evidence map›Paper›PMID 39620439›Full record

ReviewNatural product reports2025

Effective data visualization strategies in untargeted metabolomics.

Kevin Mildau, Henry Ehlers, Mara Meisenburg, Elena Del Pup, Robert A Koetsier, Laura Rosina Torres Ortega, Niek F de Jonge, Kumar Saurabh Singh, Dora Ferreira, Kgalaletso Othibeng and 3 more

Abstract readReview
In one paragraph

Review in Natural product reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. A Metabolome Atlas of Grape Biodiversity.Journal of agricultural and food chemistry · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Kevin MildauBioinformatics Group, Wageningen University & Research, Wageningen, The Netherlands. kevin.mildau@wur.nl.ORCID 0000-0001-7776-0890
Henry EhlersVisualization Group, Institute of Visual Computing and Human-Centered Technology, TU Wien, Vienna, Austria. henry.ehlers@tuwien.ac.at.ORCID 0000-0002-5994-1492
Mara MeisenburgAdaptation Physiology Group, Wageningen University & Research, Wageningen, The Netherlands.ORCID 0000-0002-3071-2872
Elena Del PupBioinformatics Group, Wageningen University & Research, Wageningen, The Netherlands. kevin.mildau@wur.nl.ORCID 0000-0002-9472-918X
Robert A KoetsierBioinformatics Group, Wageningen University & Research, Wageningen, The Netherlands. kevin.mildau@wur.nl.ORCID 0000-0002-4477-5401
Laura Rosina Torres OrtegaBioinformatics Group, Wageningen University & Research, Wageningen, The Netherlands. kevin.mildau@wur.nl.ORCID 0000-0003-4439-6740
Niek F de JongeBioinformatics Group, Wageningen University & Research, Wageningen, The Netherlands. kevin.mildau@wur.nl.ORCID 0000-0002-3054-6210
Kumar Saurabh SinghBioinformatics Group, Wageningen University & Research, Wageningen, The Netherlands. kevin.mildau@wur.nl.ORCID 0000-0001-8352-5897
Dora FerreiraNAICONS Srl, Milan, Italy.ORCID 0000-0002-5823-4219
Kgalaletso OthibengDepartment of Biochemistry, University of Johannesburg, Johannesburg, South Africa.ORCID 0000-0003-4067-6796
Fidele TugizimanaDepartment of Biochemistry, University of Johannesburg, Johannesburg, South Africa.ORCID 0000-0001-8172-6599
Florian HuberCentre for Digitalisation and Digitality, Düsseldorf University of Applied Sciences, Düsseldorf, Germany.ORCID 0000-0002-3535-9406
Justin J J van der HooftBioinformatics Group, Wageningen University & Research, Wageningen, The Netherlands. kevin.mildau@wur.nl.ORCID 0000-0002-9340-5511

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Covering: 2014 to 2023 for metabolomics, 2002 to 2023 for information visualizationLC-MS/MS-based untargeted metabolomics is a rapidly developing research field spawning increasing numbers of computational metabolomics tools assisting researchers with their complex data processing, analysis, and interpretation tasks. In this article, we review the entire untargeted metabolomics workflow from the perspective of information visualization, visual analytics and visual data integration. Data visualization is a crucial step at every stage of the metabolomics workflow, where it provides core components of data inspection, evaluation, and sharing capabilities. However, due to the large number of available data analysis tools and corresponding visualization components, it is hard for both users and developers to get an overview of what is already available and which tools are suitable for their analysis. In addition, there is little cross-pollination between the fields of data visualization and metabolomics, leaving visual tools to be designed in a secondary and mostly

Indexed as

Data VisualizationMetabolomicsTandem Mass Spectrometry

Identifiers

PMID39620439
PMCPMC11610048

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.