Evidence map›Paper›PMID 39620430›Full record

ArticleJournal of proteome research2025

Quantitative Top-down Proteomics Revealed Kinase Inhibitor-Induced Proteoform-Level Changes in Cancer Cells.

Trishika Chowdhury, Kellye A Cupp-Sutton, Yanting Guo, Kevin Gao, Zhitao Zhao, Anthony Burgett, Si Wu

Abstract read
In one paragraph

Article in Journal of proteome research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Trishika ChowdhuryDepartment of Chemistry and Biochemistry, University of Alabama, Tuscaloosa, Alabama 35401, United States.
Kellye A Cupp-SuttonDepartment of Chemistry and Biochemistry, University of Alabama, Tuscaloosa, Alabama 35401, United States.
Yanting GuoDepartment of Chemistry and Biochemistry, University of Oklahoma, Norman, Oklahoma 73019, United States.
Kevin GaoDepartment of Chemistry and Biochemistry, University of Oklahoma, Norman, Oklahoma 73019, United States.
Zhitao ZhaoDepartment of Chemistry and Biochemistry, University of Oklahoma, Norman, Oklahoma 73019, United States.
Anthony BurgettUniversity of Oklahoma Health Science Center, Oklahoma City, Oklahoma 73104, United States.ORCID 0000-0002-0685-5144
Si WuDepartment of Chemistry and Biochemistry, University of Alabama, Tuscaloosa, Alabama 35401, United States.ORCID 0000-0002-6346-7359

Funding

Translation of immunologic technologies from basic research into pre-clinical nonU19AI062629 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI COGGESHALL, KENNETH MARK · 2004 to 2023
$56.2M
Quantitative Analysis of Serum Autoantibody Repertories in Systemic Lupus ErythematosusR01AI141625 · NIAID · UNIVERSITY OF OKLAHOMA · PI SINGH, SHANTERI, SMITH, KENNETH MICHAEL · 2019 to 2023
$2.1M
NIAID NIH HHS R01 AI141625NIAID NIH HHS U19 AI062629
6 · The paper itself

Abstract

Quantitative analysis of proteins and their post-translational modifications (PTMs) in complex biological samples is critical to understanding cellular biology as well as disease detection and treatment. Top-down proteomics methods provide a "bird's eye" view of the proteome by directly detecting and quantifying intact proteoforms. Here, we developed a high-throughput quantitative top-down proteomics platform to probe intact proteoform and phosphoproteoform abundance changes in

Indexed as

Protein Kinase InhibitorsProteomicsStaurosporineAdaptor Proteins, Signal TransducingCell Cycle ProteinsHeLa CellsHumansPhosphoproteinsPhosphorylationProtein Processing, Post-TranslationalProteomeAdaptor Proteins, Signal TransducingCell Cycle ProteinsEIF4EBP1 protein, humanPhosphoproteinsProtein Kinase InhibitorsProteomeStaurosporinekinase inhibitionLC−MS/MSphosphoproteomicsquantitative proteomicsTop-down proteomics

Identifiers

PMID39620430
PMCPMC11784628

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.