Evidence map›Paper›PMID 39618483›Full record

ArticleJournal of advances in modeling earth systems2024

BioRT-HBV 1.0: A Biogeochemical Reactive Transport Model at the Watershed Scale.

Kayalvizhi Sadayappan, Bryn Stewart, Devon Kerins, Andrew Vierbicher, Wei Zhi, Valerie Diana Smykalov, Yuning Shi, Marc Vis, Jan Seibert, Li Li

Abstract read
In one paragraph

Article in Journal of advances in modeling earth systems, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Kayalvizhi SadayappanDepartment of Civil and Environmental Engineering The Pennsylvania State University University Park PA USA.ORCID https://orcid.org/0000-0002-7738-7616
Bryn StewartDepartment of Civil and Environmental Engineering The Pennsylvania State University University Park PA USA.ORCID https://orcid.org/0000-0002-3199-0129
Devon KerinsDepartment of Civil and Environmental Engineering The Pennsylvania State University University Park PA USA.ORCID https://orcid.org/0000-0003-0443-1230
Andrew VierbicherDepartment of Civil and Environmental Engineering The Pennsylvania State University University Park PA USA.ORCID https://orcid.org/0009-0006-4449-7540
Wei ZhiDepartment of Civil and Environmental Engineering The Pennsylvania State University University Park PA USA.ORCID https://orcid.org/0000-0001-5485-1095
Valerie Diana SmykalovDepartment of Civil and Environmental Engineering The Pennsylvania State University University Park PA USA.ORCID https://orcid.org/0000-0001-6290-197X
Yuning ShiDepartment of Plant Science The Pennsylvania State University University Park PA USA.ORCID https://orcid.org/0000-0003-0118-5847
Marc VisDepartment of Geography University of Zurich Zurich Switzerland.ORCID https://orcid.org/0000-0002-5589-2611
Jan SeibertDepartment of Geography University of Zurich Zurich Switzerland.ORCID https://orcid.org/0000-0002-6314-2124
Li LiDepartment of Civil and Environmental Engineering The Pennsylvania State University University Park PA USA.ORCID https://orcid.org/0000-0002-1641-3710

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Reactive Transport Models (RTMs) are essential tools for understanding and predicting intertwined ecohydrological and biogeochemical processes on land and in rivers. While traditional RTMs have focused primarily on subsurface processes, recent watershed-scale RTMs have integrated ecohydrological and biogeochemical interactions between surface and subsurface. These emergent, watershed-scale RTMs are often spatially explicit and require extensive data, computational power, and computational expertise. There is however a pressing need to create parsimonious models that require minimal data and are accessible to scientists with limited computational background. To that end, we have developed BioRT-HBV 1.0, a watershed-scale, hydro-biogeochemical RTM that builds upon the widely used, bucket-type HBV model known for its simplicity and minimal data requirements. BioRT-HBV uses the conceptual structure and hydrology output of HBV to simulate processes including advective solute transport and biogeochemical reactions that depend on reaction thermodynamics and kinetics. These reactions include, for example, chemical weathering, soil respiration, and nutrient transformation. The model uses time series of weather (air temperature, precipitation, and potential evapotranspiration) and initial biogeochemical conditions of subsurface water, soils, and rocks as input, and output times series of reaction rates and solute concentrations in subsurface waters and rivers. This paper presents the model structure and governing equations and demonstrates its utility with examples simulating carbon and nitrogen processes in a headwater catchment. As shown in the examples, BioRT-HBV can be used to illuminate the dynamics of biogeochemical reactions in the invisible, arduous-to-measure subsurface, and their influence on the observed stream or river chemistry and solute export. With its parsimonious structure and easy-to-use graphical user interface, BioRT-HBV can be a useful research tool for users without in-depth computational training. It can additionally serve as an educational tool that promotes pollination of ideas across disciplines and foster a diverse, equal, and inclusive user community.

Indexed as

biogeochemistrycarbonhydrologynutrient processesreactive transport modelingwater quality

Identifiers

PMID39618483
PMCPMC11608103

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.