Evidence map›Paper›PMID 39616158›Full record

ReviewNPJ systems biology and applications2024

Immune digital twins for complex human pathologies: applications, limitations, and challenges.

Anna Niarakis, Reinhard Laubenbacher, Gary An, Yaron Ilan, Jasmin Fisher, Åsmund Flobak, Kristin Reiche, María Rodríguez Martínez, Liesbet Geris, Luiz Ladeira and 37 more

Abstract readReview
In one paragraph

Review in NPJ systems biology and applications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  16. The Potential of Digital Twins for Pediatric Rare Diseases.CPT: pharmacometrics & systems pharmacology · 2026
    Review
  17. Review
  18. Article
  19. Review
  20. A digital twin forJournal of medical microbiology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

47 authors.

Anna NiarakisMolecular, Cellular and Developmental Biology Unit (MCD), Centre de Biologie Integrative (CBI), University of Toulouse, UPS, CNRS, Toulouse, France. anna.niaraki@univ-tlse3.fr.ORCID 0000-0002-9687-7426
Reinhard LaubenbacherDepartment of Medicine, University of Florida, Gainesville, FL, USA.ORCID 0000-0002-9143-9451
Gary AnDepartment of Surgery, University of Vermont Larner College of Medicine, Vermont, USA.
Yaron IlanFaculty of Medicine Hebrew University, Hadassah Medical Center, Jerusalem, Israel.ORCID 0000-0003-0802-1220
Jasmin FisherUCL Cancer Institute, University College London, Paul O'Gorman Building, 72 Huntley Street, London, WC1E 6BT, UK.
Åsmund FlobakDepartment of Clinical and Molecular Medicine, Norwegian University of Science and Technology, Trondheim, Norway.
Kristin ReicheDepartment of Diagnostics, Fraunhofer Institute for Cell Therapy and Immunology, Leipzig, Germany.
María Rodríguez MartínezDepartment of Biomedical Informatics & Data Science, Yale School of Medicine, New Haven, CT, USA.
Liesbet GerisPrometheus Division of Skeletal Tissue Engineering, KU Leuven, Leuven, Belgium.ORCID 0000-0002-8180-1445
Luiz LadeiraBiomechanics Research Unit, GIGA Molecular and Computational Biology, University of Liège, Liège, Belgium.
Lorenzo VeschiniFaculty of Dentistry Oral & Craniofacial Sciences, King's College London, London, UK.
Michael L BlinovCenter for Cell Analysis and Modeling, UConn Health, Farmington, CT, 06030, USA.ORCID 0000-0002-9363-9705
Francesco MessinaDepartment of Epidemiology, Preclinical Research and Advanced Diagnostic, National Institute for Infectious Diseases 'Lazzaro Spallanzani' - I.R.C.C.S., Rome, Italy.
Luis L FonsecaDepartment of Medicine, University of Florida, Gainesville, FL, USA.ORCID 0000-0002-7902-742X
Sandra FerreiraMathematics Department and Center of Mathematics, University of Beira Interior, Covilhã, Portugal.
Arnau MontagudBarcelona Supercomputing Center (BSC), Barcelone, Spain.
Vincent NoëlInstitut Curie, Université PSL, F-75005, Paris, France.ORCID 0000-0003-3448-291X
Malvina MarkuUniversité de Toulouse, Inserm, CNRS, Université Toulouse III-Paul Sabatier, Centre de Recherches en Cancérologie de Toulouse, Toulouse, France.
Eirini TsirvouliDepartment of Clinical and Molecular Medicine, Norwegian University of Science and Technology, Trondheim, Norway.
Marcella M TorresDepartment of Mathematics and Statistics, University of Richmond, Richmond, VA, USA.
Leonard A HarrisDepartment of Biomedical Engineering, University of Arkansas, Fayetteville, AR, USA.ORCID 0000-0003-2112-6940
T J SegoDepartment of Medicine, University of Florida, Gainesville, FL, USA.
Chase CockrellDepartment of Surgery, University of Vermont Larner College of Medicine, Vermont, USA.ORCID 0000-0003-3224-7617
Amanda E ShickDepartment of Mechanical and Aerospace Engineering, University of Florida, Gainesville, FL, USA.
Hasan BalciMaastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, The Netherlands.
Albin SalazarINRIA Paris/CNRS/École Normale Supérieure/PSL Research University, Paris, France.
Kinza RianAndalusian Platform for Computational Medicine, Andalusian Public Foundation Progress and Health-FPS, Seville, Spain.
Ahmed Abdelmonem HemedanBioinformatics Core Unit, Luxembourg Centre of Systems Biomedicine LCSB, Luxembourg University, Esch-sur-Alzette, Luxembourg.ORCID 0000-0001-7403-181X
Marina Esteban-MedinaAndalusian Platform for Computational Medicine, Andalusian Public Foundation Progress and Health-FPS, Seville, Spain.
Bernard StaumontBiomechanics Research Unit, GIGA Molecular and Computational Biology, University of Liège, Liège, Belgium.
Esteban Hernandez-VargasDepartment of Mathematics and Statistical Science, University of Idaho, Moscow, ID, 83844-1103, USA.
Shiny Martis BNovadiscovery, Lyon, France.
Alejandro Madrid-ValienteBarcelona Supercomputing Center (BSC), Barcelone, Spain.
Panagiotis KarampelesisDepartment of Electrical and Computer Engineering, University of Patras, Patras, Greece.
Luis Sordo VieiraDepartment of Medicine, University of Florida, Gainesville, FL, USA.
Pradyumna HarlapurDepartment of Bioengineering, Indian Institute of Science, Bengaluru, India.ORCID 0000-0001-6241-3183
Alexander KuleszaNovadiscovery, Lyon, France.
Niloofar NikaeinSchool of Medical Sciences, Faculty of Medicine and Health, Örebro University, SE-70182, Örebro, Sweden.
Winston GariraMultiscale Mathematical Modelling of Living Systems program (M3-LSP), Kimberley, South Africa.
Rahuman S Malik SheriffEuropean Bioinformatics Institute, European Molecular Biology Laboratory (EMBL-EBI), Hinxton, Cambridge, UK.ORCID 0000-0003-0705-9809
Juilee ThakarDepartment of Microbiology & Immunology and Department of Biostatistics & Computational Biology, University of Rochester Medical Center, Rochester, NY, 14642, USA.ORCID 0000-0003-4479-4183
Van Du T TranVital-IT Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland.ORCID 0000-0003-2074-5029
Jose Carbonell-CaballeroBarcelona Supercomputing Center (BSC), Barcelone, Spain.
Soroush SafaeiInstitute of Biomedical Engineering and Technology, Ghent University, Gent, Belgium.
Alfonso ValenciaBarcelona Supercomputing Center (BSC), Barcelone, Spain.ORCID 0000-0002-8937-6789
Andrei ZinovyevIn silico R&D, Evotec, 31400, Toulouse, France.
James A GlazierBiocomplexity Institute and Department of Intelligent Systems Engineering, Indiana University, Bloomington, Indiana, 47408, USA.

Funding

TR&D3: Standards and Tools for Simulator Composition and Credibility portalP41EB023912 · NIBIB · UNIVERSITY OF WASHINGTON · PI Ion I. Moraru · 2018 to 2026
$11.4M
Mechanistic Modeling of Cellular SystemsR24GM137787 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI Pedro Mendes, Ion I. Moraru · 2020 to 2026
$8.9M
Multiscale modeling of the role of heme during invasive pulmonary aspergillosisR01AI135128 · NIAID · UNIVERSITY OF FLORIDA · PI REINHARD LAUBENBACHER, Borna Mehrad · 2018 to 2026
$4.9M
Mechanistic modeling of the innate immune responses of the human lung to understand the inter-individual heterogeneity of COVID-19 pneumoniaR01HL169974 · NHLBI · UNIVERSITY OF FLORIDA · PI REINHARD LAUBENBACHER, Borna Mehrad · 2023 to 2026
$2.9M
Agent-based Models to address the Crisis of Reproducibility and Precision MedicineU01EB025825 · NIBIB · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI AN, GARY, FAISSOL, DANIEL M · 2018 to 2021
$2.3M
Control of heterogeneous microbial communities using model-based multi-objective optimizationR01GM127909 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI DONGARI-BAGTZOGLOU, ANNA I, LAUBENBACHER, REINHARD · 2018 to 2021
$1.8M
Dissemination of libRoadRunner and CompuCell3DU24EB028887 · NIBIB · UNIVERSITY OF WASHINGTON · PI GLAZIER, JAMES ALEXANDER, SAURO, HERBERT M. · 2019 to 2023
$1.5M
Uncovering the molecular networks underlying non-genetic heterogeneity in cancer cell populationsK22CA237857 · NCI · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI HARRIS, LEONARD ALFREDO L. · 2020 to 2022
$563k
Tuning complement-mediated immunity in aspergillosis: a systems medicine approachK25AI175668 · NIAID · UNIVERSITY OF FLORIDA · PI Luis Alfonso Sordo Vieira · 2024 to 2026
$351k
NCI NIH HHS K22 CA237857NHLBI NIH HHS R01 HL169974NIAID NIH HHS K25 AI175668NIAID NIH HHS R01 AI135128NIBIB NIH HHS P41 EB023912NIBIB NIH HHS U01 EB025825NIBIB NIH HHS U24 EB028887NIGMS NIH HHS R01 GM127909NIGMS NIH HHS R24 GM137787
6 · The paper itself

Abstract

Digital twins represent a key technology for precision health. Medical digital twins consist of computational models that represent the health state of individual patients over time, enabling optimal therapeutics and forecasting patient prognosis. Many health conditions involve the immune system, so it is crucial to include its key features when designing medical digital twins. The immune response is complex and varies across diseases and patients, and its modelling requires the collective expertise of the clinical, immunology, and computational modelling communities. This review outlines the initial progress on immune digital twins and the various initiatives to facilitate communication between interdisciplinary communities. We also outline the crucial aspects of an immune digital twin design and the prerequisites for its implementation in the clinic. We propose some initial use cases that could serve as "proof of concept" regarding the utility of immune digital technology, focusing on diseases with a very different immune response across spatial and temporal scales (minutes, days, months, years). Lastly, we discuss the use of digital twins in drug discovery and point out emerging challenges that the scientific community needs to collectively overcome to make immune digital twins a reality.

Indexed as

Precision MedicineComputer SimulationDrug DiscoveryHumansImmune System

Identifiers

PMID39616158
PMCPMC11608242

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.