Evidence map›Paper›PMID 39614156›Full record

ArticleBMC genomics2024

Genome-wide identification and characterization of the LRX gene family in grapevine (Vitis vinifera L.) and functional characterization of VvLRX7 in plant salt response.

Kai Liu, Xiujie Li, Chaoping Wang, Yan Han, Ziguo Zhu, Bo Li

Abstract read
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

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4citing papers in PubMed
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1 · What the graph read from it

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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  4. Comprehensive Analysis of thePlants (Basel, Switzerland) · 2025
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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Kai LiuShandong Academy of Grape, Shandong Academy of Agricultural Science, Jinan, 250100, China.
Xiujie LiShandong Academy of Grape, Shandong Academy of Agricultural Science, Jinan, 250100, China.
Chaoping WangShandong Academy of Grape, Shandong Academy of Agricultural Science, Jinan, 250100, China.
Yan HanShandong Academy of Grape, Shandong Academy of Agricultural Science, Jinan, 250100, China.
Ziguo ZhuShandong Academy of Grape, Shandong Academy of Agricultural Science, Jinan, 250100, China.
Bo LiShandong Academy of Grape, Shandong Academy of Agricultural Science, Jinan, 250100, China. sdtalibo@163.com.

Funding

Guide Foundation of Shandong Academy of Grape SDAG2021B08Major Agricultural Technology Collaborative Promotion Program of Shandong SDNYXTTG-2024-26National Center of Technology Innovation for Comprehensive Utilization of Saline-Alkali Land GYJ2023004Science and Technology Innovation Program of Shandong Academy of Agricultural Sciences CXGC2024D16
6 · The paper itself

Abstract

backgroundLeucine-rich repeat (LRR) extensins (LRXs), which are cell wall-localized chimeric extensin proteins, are essential for the development of plants and their resistance to stress. Despite the significance of these genes, an extensive genome-wide analysis of the LRX gene family in grapevine (Vitis vinifera L.) is lacking.

resultsWe here detected 14 grapevine LRX genes and classified them into four groups through phylogenetic analysis. Then, their physiological and biochemical properties and gene/protein structures were analyzed. According to synteny analysis, tandem and segmental duplications have appreciably affected the expansion of the grapevine LRX gene family. On investigating tissue-specific expression profiles and cis-regulatory elements, we observed that VvLRXs likely serve as regulators of both the growth of grapevines and their responses to various environmental stresses. Salt stress treatments induced the expression of several VvLRXs, and VvLRX7 expression was the most significantly upregulated. Furthermore, VvLRX7 expression was positively correlated with the salt tolerance of grape rootstocks. VvLRX7 overexpression in Arabidopsis markedly enhanced its salt tolerance.

conclusionThis study provides a general understanding of the characteristics and evolution of the LRX gene family in grapevine. VvLRX7 may function as a positive regulator of plant's response to salt stress. These findings offer a basis for future studies on the function of grapevine LRXs and their role in improving salt stress tolerance in grapevine.

Indexed as

Gene Expression Regulation, PlantMultigene FamilyPhylogenyPlant ProteinsVitisArabidopsisGenome, PlantLeucine-Rich Repeat ProteinsSalt StressSalt ToleranceSyntenyLeucine-Rich Repeat ProteinsPlant ProteinsGene expressionGene functionGenome-wide analysisGrapevineLeucine-rich repeat extensins

Identifiers

PMID39614156
PMCPMC11606049

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.