Evidence map›Paper›PMID 39614133›Full record

ArticleBMC genomics2024

Transcriptome sequencing and screening of anthocyanin related genes in purple potato tubers (Solanum tuberosum L.).

Xiaojuan Wu, Yanhong Ma, Peijie Wang, Juan Wu, Nan Li, Zhicheng Zhang, Rui Xie, Dan Wang, Hushuai Nie

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Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Xiaojuan WuAgricultural College, Inner Mongolia Agricultural University, Hohhot, China.
Yanhong MaAgricultural College, Inner Mongolia Agricultural University, Hohhot, China. mayanhong80@imau.edu.cn.
Peijie WangAgricultural College, Inner Mongolia Agricultural University, Hohhot, China.
Juan WuAgricultural College, Inner Mongolia Agricultural University, Hohhot, China.
Nan LiAgricultural College, Inner Mongolia Agricultural University, Hohhot, China.
Zhicheng ZhangAgricultural College, Inner Mongolia Agricultural University, Hohhot, China.
Rui XieInner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, 010031, China.
Dan WangCollege of Life Sciences and Technology, Jining Normal University, Ulanqab, 012000, China.
Hushuai NieAgricultural College, Inner Mongolia Agricultural University, Hohhot, China. niehs@imau.edu.cn.

Funding

Breeding Joint Research Project of Inner Mongolia Autonomous Region of China YZ2023006Natural Science Foundation of Inner Mongolia Autonomous Region of China 2022JQ06Science and technology planning project of Hohhot 2022-Agriculture-10Science and Technology Project of Inner Mongolia Autonomous Region 2020GG0221Special Funds for Basic Scientific Research Operating Expenses of Inner Mongolia Agricultural University BR22-11-16
6 · The paper itself

Abstract

backgroundPigmented potatoes (Solanum tuberosum L.) are rich in anthocyanin, which have antioxidantiy and play an important role in health and medical. Nevertheless, the regulation mechanism of anthocyanins in purple potato at different growth stages remain unclear.

resultsIn this study, through using the high-throughput sequencing and systematic bioinformatics analysis, a total of 7,176 significantly different expressed genes (DEGs) were discovered from the purple potato Huasong 66 tubers at different developmental stages. Through GO and KEGG enrichment analysis, it was found that, 43 DEGs were mainly enriched in phenylpropanoid biosynthesis, flavonoid biosynthesis, and phenylalanine metabolism, which biological processes are closely related to anthocyanin biosynthesis. The quantitative RT-PCR were verified the reliability of transcriptome data. We demonstrated that DEGs or transcription factors (TFs) which related to flavonoid metabolism were involved in the anthocyanins biosynthesis, such as the protein-coding genes PAL, CHS, CHI, 4CL, F3H, UFGT, LAR, and the TFs MYB, bHLH, and HY5.

conclusionThe key genes involved in anthocyanin synthesis in potato tubers were identificated, it provides new insights for molecular breeding new cultivars. These results are valuable for improving the anthocyanin in potato.

Indexed as

AnthocyaninsPlant TubersSolanum tuberosumComputational BiologyFlavonoidsGene Expression ProfilingGene Expression Regulation, PlantHigh-Throughput Nucleotide SequencingPlant ProteinsTranscription FactorsTranscriptomeAnthocyaninsFlavonoidsPlant ProteinsTranscription FactorsAnthocyanin accumulationKey genesPurple potatoTranscriptome

Identifiers

PMID39614133
PMCPMC11607881

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