Evidence map›Paper›PMID 39613846›Full record

ArticleScientific reports2024

De-identification is not enough: a comparison between de-identified and synthetic clinical notes.

Atiquer Rahman Sarkar, Yao-Shun Chuang, Noman Mohammed, Xiaoqian Jiang

Abstract readComparative Study
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. AI-based augmentation of oncology clinical trials.Nature reviews. Clinical oncology · 2026
    Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Not Fully Synthetic: LLM-based Hybrid Approaches Towards Privacy-Preserving Clinical Note Sharing.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Atiquer Rahman SarkarDepartment of Computer Science, University of Manitoba, Winnipeg, R3T 5V6, Canada. sarkarar@myumanitoba.ca.
Yao-Shun ChuangMcWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, 77030, USA.
Noman MohammedDepartment of Computer Science, University of Manitoba, Winnipeg, R3T 5V6, Canada.
Xiaoqian JiangMcWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, 77030, USA.

Funding

AIM-AHEAD Coordinating Center - All Four CoresOT2OD032581 · OD · UNIVERSITY OF NORTH TEXAS HLTH SCI CTR · PI Paul Avillach, Bettina M. Beech · 2021 to 2026
$168.7M
RADx-Rad Discoveries & Data: Consortium Coordination Center Program OrganizationU24LM013755 · NLM · YALE UNIVERSITY · PI ARONOFF-SPENCER, ELIAH S, OHNO-MACHADO, LUCILA · 2021 to 2023
$23.3M
Ethics Core (FABRIC)U54HG012510 · NHGRI · YALE UNIVERSITY · PI MALIN, BRADLEY A. · 2022 to 2025
$11.2M
Open Health Natural Language Processing CollaboratoryU01TR002062 · NCATS · MAYO CLINIC ROCHESTER · PI JIANG, XIAOQIAN, LIU, HONGFANG · 2017 to 2021
$7.6M
AIM-AI: an Actionable, Integrated and Multiscale genetic map of Alzheimer's disease via deep learningU01AG079847 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Christopher A. Gaiteri, Xiaoqian Jiang · 2023 to 2026
$5.1M
Finding Combinatorial Drug Repositioning Therapy For Alzheimer'S Disease And Related DementiasR01AG066749 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI JIANG, XIAOQIAN, ZHENG, WENJIN JIM · 2020 to 2024
$4.4M
Accelerating Genomic Data Sharing and Collaborative Research with Privacy ProtectionR01LM014520 · NLM · CASE WESTERN RESERVE UNIVERSITY · PI Erman Ayday, Xiaoqian Jiang · 2023 to 2026
$2.6M
Decentralized differentially-private methods for dynamic data release and analysisR01LM013712 · NLM · YALE UNIVERSITY · PI JIANG, XIAOQIAN, OHNO-MACHADO, LUCILA · 2022 to 2025
$2.5M
Data-driven Subtypes of Alzheimer's disease progression for targeted treatmentR01AG084637 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Xiaoqian Jiang, Yejin Kim · 2024 to 2026
$2.3M
Harmonizing multiple clinical trials for Alzheimer's disease to investigate differential responses to treatment via federated counterfactual learningR01AG082721 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Xiaoqian Jiang, Yejin Kim · 2023 to 2026
$2.0M
Robust privacy preserving distributed analysis platform for cancer research: addressing data bias and disparitiesU01CA274576 · NCI · UNIVERSITY OF PENNSYLVANIA · PI JIANG, XIAOQIAN, LONG, QI · 2023 to 2025
$1.2M
CPRIT Scholar in Cancer Research RR180012National Science Foundation 2124789NCI NIH HHS U01 CA274576NHGRI NIH HHS U54 HG012510NIA NIH HHS R01 AG066749NIA NIH HHS R01 AG082721NIA NIH HHS R01 AG084637NIA NIH HHS U01 AG079847NIH HHS 1OT2OD032581-02-164NIH HHS 1OT2OD032581-02-211NIH HHS R01AG066749NIH HHS R01AG066749-03S1NIH HHS R01AG082721NIH HHS R01LM014520NIH HHS RR01LM013712NIH HHS U01AG079847NIH HHS U01CA274576NIH HHS U01TR002062NIH HHS U24LM013755NIH HHS U54HG012510NLM NIH HHS R01 LM013712NLM NIH HHS R01 LM014520NLM NIH HHS U24 LM013755NSERC Discovery Grants RGPIN-04127-2022University of Manitoba University of Manitoba Graduate Fellowship; Gordon P. Osler Graduate ScholarshipUniversity of Texas Health Science Center at Houston Christopher Sarofim Family Professorship; UT Stars award; UTHealth startup
6 · The paper itself

Abstract

For sharing privacy-sensitive data, de-identification is commonly regarded as adequate for safeguarding privacy. Synthetic data is also being considered as a privacy-preserving alternative. Recent successes with numerical and tabular data generative models and the breakthroughs in large generative language models raise the question of whether synthetically generated clinical notes could be a viable alternative to real notes for research purposes. In this work, we demonstrated that (i) de-identification of real clinical notes does not protect records against a membership inference attack, (ii) proposed a novel approach to generate synthetic clinical notes using the current state-of-the-art large language models, (iii) evaluated the performance of the synthetically generated notes in a clinical domain task, and (iv) proposed a way to mount a membership inference attack where the target model is trained with synthetic data. We observed that when synthetically generated notes closely match the performance of real data, they also exhibit similar privacy concerns to the real data. Whether other approaches to synthetically generated clinical notes could offer better trade-offs and become a better alternative to sensitive real notes warrants further investigation.

Indexed as

Computer SecurityConfidentialityElectronic Health RecordsAlgorithmsHumansPrivacy

Identifiers

PMID39613846
PMCPMC11607336

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.