Evidence map›Paper›PMID 39611991›Full record

ArticleAnalytical and bioanalytical chemistry2025

Cooperation of GlycoPOST and UniCarb-DR towards a comprehensive glycomics data repository workflow.

Yushi Takahashi, Niclas G Karlsson, Shujiro Okuda, Kiyoko F Aoki-Kinoshita

Abstract read
In one paragraph

Article in Analytical and bioanalytical chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Yushi TakahashiMedical AI Center, Niigata University School of Medicine, Niigata, Japan.ORCID http://orcid.org/0000-0002-9194-6293
Niclas G KarlssonDivision of Pharmacy, Department of Life Sciences and Health, Faculty of Health Sciences, Oslo Metropolitan University, Oslo, Norway.ORCID http://orcid.org/0000-0002-3045-2628
Shujiro OkudaMedical AI Center, Niigata University School of Medicine, Niigata, Japan.ORCID http://orcid.org/0000-0002-7704-8104
Kiyoko F Aoki-KinoshitaGlycan and Life Systems Integration Center, Faculty of Science and Engineering, Soka University, Tokyo, Japan. kkiyoko@soka.ac.jp.ORCID http://orcid.org/0000-0002-6662-8015

Funding

National Bioscience Database Center JPMJND2204
6 · The paper itself

Abstract

In glycomics, two data repositories, GlycoPOST and UniCarb-DR, have been developed to accumulate experimental data generated by glycomics and glycoproteomics mass spectrometry experiments. In order to enhance the interrelation between these two data repositories, we have upgraded the framework for both of them; we have unified their respective data submission systems and constructed a mechanism that can automatically cross-reference corresponding entries. In addition to this integration, the metadata registration system was also extended so that liquid chromatography experiments can be reported according to standard reporting guidelines specified by MIRAGE (Minimum Information Required for A Glycomics Experiment). Furthermore, by augmenting the visualization software used in UniCarb-DR, we have been able to introduce new functionality into GlycoPOST to enable the visualization of unpublished experimental identification result files during an embargo period defined by the data provider. As a result, this work introduces a new framework by which glycomics researchers can take advantage of GlycoPOST and UniCarb-DR in an integrated manner.

Indexed as

Databases, FactualGlycomicsSoftwareMass SpectrometryWorkflowData repositoryGlycoinformaticsGlycomicsLiquid chromatographyMass spectrometryMetadata

Identifiers

PMID39611991
PMCPMC11782440

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.