Evidence map›Paper›PMID 39609437›Full record

ArticleNature communications2024

PTPN23-dependent ESCRT machinery functions as a cell death checkpoint.

Dongyan Song, Yuxin Cen, Zhe Qian, Xiaoli S Wu, Keith Rivera, Tse-Luen Wee, Osama E Demerdash, Kenneth Chang, Darryl Pappin, Christopher R Vakoc and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Dongyan SongCold Spring Harbor Laboratory, Cold Spring Harbor, New York, NY, USA.
Yuxin CenCold Spring Harbor Laboratory, Cold Spring Harbor, New York, NY, USA.
Zhe QianCold Spring Harbor Laboratory, Cold Spring Harbor, New York, NY, USA.
Xiaoli S WuCold Spring Harbor Laboratory, Cold Spring Harbor, New York, NY, USA.ORCID 0000-0001-5587-2146
Keith RiveraCold Spring Harbor Laboratory, Cold Spring Harbor, New York, NY, USA.ORCID 0000-0003-2979-9576
Tse-Luen WeeCold Spring Harbor Laboratory, Cold Spring Harbor, New York, NY, USA.ORCID 0000-0002-4141-3157
Osama E DemerdashCold Spring Harbor Laboratory, Cold Spring Harbor, New York, NY, USA.
Kenneth ChangCold Spring Harbor Laboratory, Cold Spring Harbor, New York, NY, USA.
Darryl PappinCold Spring Harbor Laboratory, Cold Spring Harbor, New York, NY, USA.
Christopher R VakocCold Spring Harbor Laboratory, Cold Spring Harbor, New York, NY, USA.ORCID 0000-0002-1158-7180
Nicholas K TonksCold Spring Harbor Laboratory, Cold Spring Harbor, New York, NY, USA. tonks@cshl.edu.

Funding

Single-Cell Biology Shared ResourceP30CA045508 · NCI · COLD SPRING HARBOR LABORATORY · PI John Edward Moses · 1987 to 2026
$118.9M
VIRAL TRANSACTIVATIONP01CA013106 · NCI · COLD SPRING HARBOR LABORATORY · PI Camila dos Santos · 1985 to 2026
$116.8M
PROTEIN TYROSINE DEPHOSPHORYLATION &SIGNAL TRANSDUCTIONR01CA053840 · NCI · COLD SPRING HARBOR LABORATORY · PI TONKS, NICHOLAS K · 1991 to 2025
$11.8M
BET bromodomain inhibition as targeted therapy in acute myeloid leukemiaR01CA174793 · NCI · COLD SPRING HARBOR LABORATORY · PI VAKOC, CHRISTOPHER · 2013 to 2023
$5.5M
Elucidating the SCP4 pathway as a multi-catalytic signaling dependency in acute myeloid leukemiaR01CA281106 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Christopher Vakoc, Yan Jessie Zhang · 2023 to 2026
$2.9M
Exploiting POU2F3 addiction in the tuft cell variant of small cell lung cancerU01CA242919 · NCI · COLD SPRING HARBOR LABORATORY · PI VAKOC, CHRISTOPHER · 2019 to 2023
$2.2M
NCI NIH HHS P01 CA013106NCI NIH HHS P30 CA045508NCI NIH HHS R01 CA053840NCI NIH HHS R01 CA174793NCI NIH HHS R01 CA281106NCI NIH HHS U01 CA242919U.S. Department of Health & Human Services | National Institutes of Health (NIH) CA53840
6 · The paper itself

Abstract

Cell death plasticity is crucial for modulating tissue homeostasis and immune responses, but our understanding of the molecular components that regulate cell death pathways to determine cell fate remains limited. Here, a CRISPR screen of acute myeloid leukemia cells identifies protein tyrosine phosphatase non-receptor type 23 (PTPN23) as essential for survival. Loss of PTPN23 activates nuclear factor-kappa B, apoptotic, necroptotic, and pyroptotic pathways by causing the accumulation of death receptors and toll-like receptors (TLRs) in endosomes. These effects are recapitulated by depletion of PTPN23 co-dependent genes in the endosomal sorting complex required for transport (ESCRT) pathway. Through proximity-dependent biotin labeling, we show that NAK-associated protein 1 interacts with PTPN23 to facilitate endosomal sorting of tumor necrosis factor receptor 1 (TNFR1), sensitizing cells to TNF-α-induced cytotoxicity. Our findings reveal PTPN23-dependent ESCRT machinery as a cell death checkpoint that regulates the spatiotemporal distribution of death receptors and TLRs to restrain multiple cell death pathways.

Indexed as

Endosomal Sorting Complexes Required for TransportEndosomesApoptosisCell DeathCell Line, TumorHEK293 CellsHumansLeukemia, Myeloid, AcuteNF-kappa BProtein Tyrosine Phosphatases, Non-ReceptorReceptors, Death DomainReceptors, Tumor Necrosis Factor, Type ISignal TransductionToll-Like ReceptorsTumor Necrosis Factor-alphaEndosomal Sorting Complexes Required for TransportNF-kappa BProtein Tyrosine Phosphatases, Non-ReceptorReceptors, Death DomainReceptors, Tumor Necrosis Factor, Type IToll-Like ReceptorsTumor Necrosis Factor-alpha

Identifiers

PMID39609437
PMCPMC11604704

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.