Evidence map›Paper›PMID 39609405›Full record

ArticleNature communications2024

Use of epigenetically modified bacteriophage and dual beta-lactams to treat a Mycobacterium abscessus sternal wound infection.

Madison Cristinziano, Elena Shashkina, Liang Chen, Jaime Xiao, Melissa B Miller, Christina Doligalski, Raymond Coakley, Leonard Jason Lobo, Brent Footer, Luther Bartelt and 12 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Review
  6. Smooth-to-rough morphotype switching, a mechanism of phage resistance inProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. The Role of β-Lactam Antibiotics in Treating Mycobacterium abscessus: From Laboratory Insights to Clinical Applications and the Case for Clinical Trials.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2026
    Review
  8. Review
  9. Article
  10. Genome synthesis, assembly, and rebooting of therapeutically useful high G+C% mycobacteriophages.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. P3MA: A Promising Mycobacteriophage InfectingAntibiotics (Basel, Switzerland) · 2025
    Article
  15. Review
  16. Frontiers in cellular and infection microbiology · 2025
    Article
  17. Review
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Madison CristinzianoDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Elena ShashkinaCenter for Discovery and Innovation, Nutley, NJ, USA.
Liang ChenCenter for Discovery and Innovation, Nutley, NJ, USA.ORCID 0000-0001-5845-2235
Jaime XiaoUniversity of North Carolina School of Medicine, Chapel Hill, NC, USA.
Melissa B MillerDepartment of Pathology and Laboratory Medicine, University of North Carolina, Chapel Hill, NC, USA.
Christina DoligalskiUniversity of North Carolina School of Medicine, Chapel Hill, NC, USA.
Raymond CoakleyDivision of Pulmonary Diseases and Critical Care Medicine, University of North Carolina, Chapel Hill, NC, USA.
Leonard Jason LoboDivision of Pulmonary Diseases and Critical Care Medicine, University of North Carolina, Chapel Hill, NC, USA.
Brent FooterDivision of Infectious Diseases, University of North Carolina, Chapel Hill, NC, USA.
Luther BarteltDivision of Infectious Diseases, University of North Carolina, Chapel Hill, NC, USA.ORCID 0000-0002-7596-4272
Lawrence AbadDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Daniel A RussellDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Rebecca GarlenaDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Michael J LauerDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA.ORCID 0009-0001-6118-1429
Maggie VilandDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Ari KaganovskyDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Emily MowryDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Deborah Jacobs-SeraDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA.ORCID 0000-0001-7838-3257
David van DuinDivision of Infectious Diseases, University of North Carolina, Chapel Hill, NC, USA.
Barry N KreiswirthCenter for Discovery and Innovation, Nutley, NJ, USA. Barry.Kreiswirth@hmh-cdi.org.ORCID 0000-0002-0243-131X
Graham F HatfullDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA. gfh@pitt.edu.ORCID 0000-0002-6705-6821
Anne FriedlandDivision of Infectious Diseases, University of North Carolina, Chapel Hill, NC, USA. aefriedl@email.unc.edu.

Funding

Bacteriophage diversity, dynamics, function, and exploitationR35GM131729 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Graham F. Hatfull · 2019 to 2026
$3.6M
Cystic Fibrosis Foundation (CF Foundation) HATFUL19GOHoward Hughes Medical Institute (HHMI) GT12053NIGMS NIH HHS R35 GM131729U.S. Department of Health & Human Services | National Institutes of Health (NIH) GM131729
6 · The paper itself

Abstract

Nontuberculous mycobacterium (NTM) infections are challenging to manage and are frequently non-responsive to aggressive but poorly-tolerated antibiotic therapies. Immunosuppressed lung transplant patients are susceptible to NTM infections and poor patient outcomes are common. Bacteriophages present an alternative treatment option and are associated with favorable clinical outcomes. Similarly, dual beta-lactam combinations show promise in vitro, but clinical use is sparse. We report here a patient with an uncontrolled Mycobacterium abscessus infection following a bilateral lung transplant and failed antibiotic therapy. Both smooth and rough colony morphotype strains were initially present, but treatment with two phages that kill the rough strain - including epigenetic-modification to overcome restriction - resulted in isolation of only the smooth strain. The rough and smooth strains have similar antibiotic susceptibilities suggesting that the phages specifically eliminated the rough strain. Dual beta-lactam therapy with meropenem and ceftazidime-avibactam provided further clinical improvement, and the phages act synergistically with meropenem in vitro.

Indexed as

Anti-Bacterial AgentsBacteriophagesbeta-LactamsMycobacterium abscessusMycobacterium Infections, NontuberculousCeftazidimeEpigenesis, GeneticHumansLung TransplantationMaleMeropenemMiddle AgedPhage TherapyWound InfectionAnti-Bacterial Agentsbeta-LactamsCeftazidimeMeropenem

Identifiers

PMID39609405
PMCPMC11604996

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.