Evidence map›Paper›PMID 39609394›Full record

ArticleNature communications2024

Mechanistic basis for the emergence of EPS1 as a catalyst in salicylic acid biosynthesis of Brassicaceae.

Michael P Torrens-Spence, Jason O Matos, Tianjie Li, David W Kastner, Colin Y Kim, Ziqi Wang, Christopher M Glinkerman, Jennifer Sherk, Heather J Kulik, Yi Wang and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Michael P Torrens-Spence *Whitehead Institute for Biomedical Research, Cambridge, MA, USA.
Jason O Matos *Whitehead Institute for Biomedical Research, Cambridge, MA, USA.
Tianjie Li *Department of Physics, The Chinese University of Hong Kong, Hong Kong, P. R. China.
David W KastnerDepartment of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0002-7766-4249
Colin Y KimWhitehead Institute for Biomedical Research, Cambridge, MA, USA.ORCID 0000-0001-9583-9789
Ziqi WangDepartment of Physics, The Chinese University of Hong Kong, Hong Kong, P. R. China.
Christopher M GlinkermanWhitehead Institute for Biomedical Research, Cambridge, MA, USA.ORCID 0000-0003-0435-7966
Jennifer SherkWhitehead Institute for Biomedical Research, Cambridge, MA, USA.
Heather J KulikDepartment of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0001-9342-0191
Yi WangDepartment of Physics, The Chinese University of Hong Kong, Hong Kong, P. R. China.ORCID 0000-0002-4174-8790
Jing-Ke WengWhitehead Institute for Biomedical Research, Cambridge, MA, USA. jingke.weng@northeastern.edu.ORCID 0000-0003-3059-0075

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Salicylic acid (SA) production in Brassicaceae plants is uniquely accelerated from isochorismate by EPS1, a newly identified enzyme in the BAHD acyltransferase family. We present crystal structures of EPS1 from Arabidopsis thaliana in both its apo and substrate-analog-bound forms. Integrating microsecond-scale molecular dynamics simulations with quantum mechanical cluster modeling, we propose a pericyclic rearrangement lyase mechanism for EPS1. We further reconstitute the isochorismate-derived SA biosynthesis pathway in Saccharomyces cerevisiae, establishing an in vivo platform to examine the impact of active-site residues on EPS1 functionality. Moreover, stable transgenic expression of EPS1 in soybean increases basal SA levels, highlighting the enzyme's potential to enhance defense mechanisms in non-Brassicaceae plants lacking an EPS1 ortholog. Our findings illustrate the evolutionary adaptation of an ancestral enzyme's active site to enable a novel catalytic mechanism that boosts SA production in Brassicaceae plants.

Indexed as

ArabidopsisArabidopsis ProteinsCatalytic DomainMolecular Dynamics SimulationSaccharomyces cerevisiaeSalicylic AcidAcyltransferasesBrassicaceaeCatalysisCrystallography, X-RayGlycine maxPlants, Genetically ModifiedAcyltransferasesArabidopsis ProteinsSalicylic Acid

Identifiers

PMID39609394
PMCPMC11605079

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.