Evidence map›Paper›PMID 39609084›Full record

ArticleYonsei medical journal2024

Mutation-Driven Immune Microenvironments in Non-Small Cell Lung Cancer: Unrevealing Patterns through Cluster Analysis.

Youngtaek Kim, Joon Yeon Hwang, Kwangmin Na, Dong Kwon Kim, Seul Lee, Seong-San Kang, Sujeong Baek, Seung Min Yang, Mi Hyun Kim, Heekyung Han and 6 more

Abstract read
In one paragraph

Article in Yonsei medical journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Youngtaek KimDepartment of Research Support, Yonsei Biomedical Research Institute, Yonsei University College of Medicine, Seoul, Korea.ORCID https://orcid.org/0009-0001-3045-9678
Joon Yeon HwangDepartment of Research Support, Yonsei Biomedical Research Institute, Yonsei University College of Medicine, Seoul, Korea.ORCID https://orcid.org/0009-0003-5557-7990
Kwangmin NaDepartment of Research Support, Yonsei Biomedical Research Institute, Yonsei University College of Medicine, Seoul, Korea.ORCID https://orcid.org/0000-0003-4916-026X
Dong Kwon KimSeverance Biomedical Science Institute, Yonsei University College of Medicine, Seoul, Korea.ORCID https://orcid.org/0000-0002-1407-2369
Seul LeeSeverance Biomedical Science Institute, Yonsei University College of Medicine, Seoul, Korea.ORCID https://orcid.org/0000-0001-8185-9981
Seong-San KangJEUK Institute for Cancer Research, JEUK Co., Ltd., Gumi, Korea.ORCID https://orcid.org/0000-0002-9074-5043
Sujeong BaekDepartment of Research Support, Yonsei Biomedical Research Institute, Yonsei University College of Medicine, Seoul, Korea.ORCID https://orcid.org/0009-0007-1215-0013
Seung Min YangDepartment of Research Support, Yonsei Biomedical Research Institute, Yonsei University College of Medicine, Seoul, Korea.ORCID https://orcid.org/0009-0005-6412-9019
Mi Hyun KimDepartment of Research Support, Yonsei Biomedical Research Institute, Yonsei University College of Medicine, Seoul, Korea.ORCID https://orcid.org/0009-0009-1253-0811
Heekyung HanDepartment of Research Support, Yonsei Biomedical Research Institute, Yonsei University College of Medicine, Seoul, Korea.ORCID https://orcid.org/0009-0006-4096-7023
Seong Su JeongDepartment of Research Support, Yonsei Biomedical Research Institute, Yonsei University College of Medicine, Seoul, Korea.ORCID https://orcid.org/0009-0000-5938-4799
Chai Young LeeDepartment of Research Support, Yonsei Biomedical Research Institute, Yonsei University College of Medicine, Seoul, Korea.ORCID https://orcid.org/0009-0008-8584-0194
Yu Jin HanDepartment of Research Support, Yonsei Biomedical Research Institute, Yonsei University College of Medicine, Seoul, Korea.ORCID https://orcid.org/0009-0007-9022-8744
Jie-Ohn SohnWide River Institute of Immunology, Seoul National University, Hongcheon, Korea.ORCID https://orcid.org/0009-0008-8340-5674
Sang-Kyu YeWide River Institute of Immunology, Seoul National University, Hongcheon, Korea.ORCID https://orcid.org/0000-0001-6102-6413
Kyoung-Ho PyoSeverance Biomedical Science Institute, Yonsei University College of Medicine, Seoul, Korea.ORCID https://orcid.org/0000-0001-5428-0288

Funding

National Research Foundation of Korea 2022M3E5F3081138National Research Foundation of Korea 2022R1A2C3005817
6 · The paper itself

Abstract

purposeWe aimed to comprehensively analyze the immune cell and stromal components of tumor microenvironment at the single-cell level and identify tumor heterogeneity among the major top-derived oncogene mutations in non-small cell lung cancer (NSCLC) using single-cell RNA sequencing (scRNA-seq) data. MATERIALS AND

methodsThe scRNA-seq dataset utilized in this study comprised 64369 primary tumor tissue cells from 21 NSCLC patients, focusing on mutations in

resultsTumor immune microenvironment (TIM) analysis revealed differential immune responses across NSCLC mutation subtypes. TIM analysis revealed different immune responses across the mutation subtypes. Two mutation clusters emerged:

conclusionOur research indicates a close association between mutation types and tumor microenvironment in NSCLC, offering insights into personalized approaches for cancer diagnosis and treatment.

Indexed as

Carcinoma, Non-Small-Cell LungLung NeoplasmsMutationTumor MicroenvironmentAnaplastic Lymphoma KinaseCluster AnalysisErbB ReceptorsHumansProto-Oncogene Proteins B-rafProto-Oncogene Proteins p21(ras)Single-Cell AnalysisTumor Suppressor Protein p53Anaplastic Lymphoma KinaseBRAF protein, humanEGFR protein, humanErbB ReceptorsKRAS protein, humanProto-Oncogene Proteins B-rafProto-Oncogene Proteins p21(ras)Tumor Suppressor Protein p53EGFR genemutationNon-small cell lung cancerScRNA-seqTP53 gene

Identifiers

PMID39609084
PMCPMC11605048

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.