Evidence map›Paper›PMID 39606343›Full record

ArticlemedRxiv : the preprint server for health sciences2024

Clinical Sentiment Analysis by Large Language Models Enhances the Prediction of Hepatorenal Syndrome in Decompensated Cirrhosis.

Mason Lai, Cynthia Fenton, Jessica Rubin, Chiung-Yu Huang, Mark Pletcher, Jennifer C Lai, Giuseppe Cullaro, Jin Ge

Abstract readPreprint
In one paragraph

Article in medRxiv : the preprint server for health sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Mason LaiDepartment of Medicine, University of California, San Francisco.ORCID 0000-0001-9501-1199
Cynthia FentonDivision of Hospital Medicine, Department of Medicine, University of California, San Francisco.
Jessica RubinDivision of Gastroenterology and Hepatology, Department of Medicine, University of California, San Francisco.
Chiung-Yu HuangDepartment of Epidemiology and Biostatistics, University of California, San Francisco.
Mark PletcherDepartment of Epidemiology and Biostatistics, University of California, San Francisco.
Jennifer C LaiDivision of Gastroenterology and Hepatology, Department of Medicine, University of California, San Francisco.
Giuseppe CullaroDivision of Digestive and Liver Diseases, Department of Medicine, Columbia University.
Jin GeDivision of Clinical Informatics and Digital Transformation, Department of Medicine, University of California, San Francisco.

Funding

Clinical and Translational Science InstituteUL1TR001872 · NCATS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI COLLARD, HAROLD R, JACOBY, VANESSA · 2016 to 2025
$112.1M
UCSF Liver Core CenterP30DK026743 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Holger Willenbring · 1986 to 2026
$30.7M
The spectrum of cognitive impairment including Alzheimer’s Disease and Related Dementias after liver transplantationR01AG059183 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jennifer C. Lai · 2018 to 2026
$9.9M
Application of Novel Biomarkers of Renal Health in Cirrhosis Patients to Stratify Risk of Acute Kidney Injury Occurrence and ReversibilityK23DK131278 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Giuseppe Cullaro · 2022 to 2026
$812k
Using real-world evidence to define safe pain management strategies in cirrhosisK23DK135901 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jessica Rubin · 2023 to 2026
$756k
The Impact of Frailty on Liver Transplant Outcomes in Older Adults with Hepatocellular CarcinomaK24AG080021 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jennifer C. Lai · 2023 to 2026
$755k
A pragmatic RCT to evaluate the effect of CirrhosisRx, a novel clinical decision support system, versus usual care on guideline-adherence and clinical outcomes for patients with cirrhosisK23DK139455 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jin Ge · 2024 to 2026
$569k
NCATS NIH HHS UL1 TR001872NIA NIH HHS K24 AG080021NIA NIH HHS R01 AG059183NIDDK NIH HHS K23 DK131278NIDDK NIH HHS K23 DK135901NIDDK NIH HHS K23 DK139455NIDDK NIH HHS L30 DK133959NIDDK NIH HHS P30 DK026743
6 · The paper itself

Abstract

Background and Aims: Hepatorenal syndrome - Acute Kidney Injury (HRS-AKI) is a severe complication of decompensated cirrhosis that is challenging to predict. Sentiment analysis, a computational process of identifying and categorizing opinions and judgment expressed in text, may enhance traditional prediction methodologies based on structured variables. Large language models (LLMs), such as generative pretrained transformers (GPTs), have demonstrated abilities to perform sentiment analyses on non-clinical texts. We sought to determine if GPT-performed sentiment analysis could improve upon predictions using clinical covariates alone in the prediction of HRS-AKI. Methods: Adult patients admitted to a single academic medical center with decompensated cirrhosis and AKI. We used a protected health information (PHI) compliant version of Microsoft Azure OpenAI GPT-4o to derive a sentiment score ranging from 0 to 1 for HRS-AKI, and conduct natural language processing (NLP) extraction of clinical terms associated with HRS-AKI in clinical notes. The area under the receiver operator curve (AUROC) was compared in logistic regression models incorporating structured variables (socio-demographics, MELD 3.0, hemodynamic parameters) with compared to without sentiment scores and NLP-extracted clinical terms. Results: In our cohort of 314 participants, higher sentiment score was associated with the diagnosis of HRS-AKI (OR 1.33 per 0.1, 95% CI 1.02-1.79) in multivariate models. AUROC of the baseline model using structured clinical covariates alone was 0.639. With the addition of the GPT-4o derived sentiment score and clinical terms to structured covariates, the final model yielded an improved AUROC of 0.758 (p=0.03). Conclusions: Clinical texts contain large amounts of data that are currently difficult to extract using standard methodologies. Sentiment analysis and NLP-based variable derivation with GPT-4o in clinical application is feasible and can improve the prediction of HRS-AKI over traditional modeling methodologies alone.

Identifiers

PMID39606343
PMCPMC11601740

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.