Evidence map›Paper›PMID 39605460›Full record

ArticlebioRxiv : the preprint server for biology2024

Stability of the polarization agent AsymPolPOK in intact and lysed mammalian cells.

Dominique Lagasca, Rupam Ghosh, Yiling Xiao, Kendra K Frederick

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Dominique LagascaDepartment of Biophysics, UT Southwestern Medical Center, Dallas, TX 75390-8816.ORCID 0000-0003-4404-4366
Rupam GhoshDepartment of Biophysics, UT Southwestern Medical Center, Dallas, TX 75390-8816.ORCID 0000-0002-3095-621X
Yiling XiaoDepartment of Biophysics, UT Southwestern Medical Center, Dallas, TX 75390-8816.ORCID 0000-0002-4548-4833
Kendra K FrederickDepartment of Biophysics, UT Southwestern Medical Center, Dallas, TX 75390-8816.ORCID 0000-0002-1656-5167

Funding

High sensitivity NMR for structure determination of neurodegenerative disease associated protein aggregates in native contextsDP2NS111236 · NINDS · UT SOUTHWESTERN MEDICAL CENTER · PI FREDERICK, KENDRA KING · 2018 to 2018
$2.4M
Molecular Biophysics Predoctoral Training ProgramT32GM008297 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI CHOOK, YUH MIN · 1989 to 2018
$2.4M
Molecular Biophysics Training ProgramT32GM131963 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Luke W Rice · 2019 to 2026
$1.5M
High sensitivity NMR for structure determination of neurodegenerative disease associated protein aggregates in native contextsR01NS134921 · NINDS · UT SOUTHWESTERN MEDICAL CENTER · PI Kendra King Frederick · 2024 to 2026
$1.3M
Determining the influence of cellular environments on a-synuclein fibril conformationsR21NS136951 · NINDS · UT SOUTHWESTERN MEDICAL CENTER · PI FREDERICK, KENDRA KING · 2024 to 2025
$447k
NIGMS NIH HHS T32 GM008297NIGMS NIH HHS T32 GM131963NINDS NIH HHS DP2 NS111236NINDS NIH HHS R01 NS134921NINDS NIH HHS R21 NS136951
6 · The paper itself

Abstract

Dynamic nuclear polarization (DNP) solid-state NMR enables detection of proteins at endogenous concentrations in cells through sensitivity enhancement from nitroxide biradical polarization agents. AsymPolPOK, a novel water-soluble asymmetric nitroxide biradical, offers superior sensitivity and faster build-up times compared to existing agents like AMUPol. Here, we characterize AsymPolPOK in mammalian HEK293 cells, examining its cellular distribution, reduction kinetics, and DNP performance. We demonstrate that electroporation achieves uniform cellular delivery of AsymPolPOK, including nuclear permeation, with no cytotoxicity at millimolar concentrations. However, the cellular environment rapidly reduces AsymPolPOK to its monoradical form, with one nitroxide center showing greater reduction resistance than the other. While AsymPolPOK maintains high DNP enhancements and short build-up times in lysates, its performance in intact cells depends critically on delivery method and exposure time to cellular constituents. Electroporation yields higher, more uniform enhancements compared to incubation, but prolonged exposure to the cellular environment diminishes DNP performance in both cases. These findings establish the potential of AsymPolPOK as a polarization agent for in-cell DNP NMR while highlighting the need for developing more bio-resistant polarization agents to further advance cellular structural biology studies.

Identifiers

PMID39605460
PMCPMC11601236

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.