Evidence map›Paper›PMID 39604831›Full record

ArticleBMC genomics2024

Genome-wide identification and expression analysis of the glutathione transferase gene family and its response to abiotic stress in rye (Secale cereale).

Hongli Shi, Ke Wan, Bingde Dou, Yanyan Ren, Lihuan Huo, Chao Zhang, Shuning Yue, Zhongling Li, Huan Guo, Jiakun Dai

Abstract read
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

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3citing papers in PubMed
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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

10 authors.

Hongli ShiShaanxi Key Laboratory of Qinling Ecological Security, Bio-Agriculture Institute of Shaanxi, Xi'an, Shaanxi, 710043, China.
Ke WanShaanxi Key Laboratory of Qinling Ecological Security, Bio-Agriculture Institute of Shaanxi, Xi'an, Shaanxi, 710043, China.
Bingde DouShaanxi Key Laboratory of Qinling Ecological Security, Bio-Agriculture Institute of Shaanxi, Xi'an, Shaanxi, 710043, China.
Yanyan RenShaanxi Key Laboratory of Qinling Ecological Security, Bio-Agriculture Institute of Shaanxi, Xi'an, Shaanxi, 710043, China.
Lihuan HuoShangluo Institute of Agricultural Science, Shangluo, Shaanxi, 726000, China.
Chao ZhangShaanxi Key Laboratory of Qinling Ecological Security, Bio-Agriculture Institute of Shaanxi, Xi'an, Shaanxi, 710043, China.
Shuning YueShaanxi Key Laboratory of Qinling Ecological Security, Bio-Agriculture Institute of Shaanxi, Xi'an, Shaanxi, 710043, China.
Zhongling LiShaanxi Key Laboratory of Qinling Ecological Security, Bio-Agriculture Institute of Shaanxi, Xi'an, Shaanxi, 710043, China.
Huan GuoShaanxi Key Laboratory of Qinling Ecological Security, Bio-Agriculture Institute of Shaanxi, Xi'an, Shaanxi, 710043, China.
Jiakun DaiShaanxi Key Laboratory of Qinling Ecological Security, Bio-Agriculture Institute of Shaanxi, Xi'an, Shaanxi, 710043, China. djkxa@163.com.

Funding

Science and Technology Program of Xi'an No.22NYGG0002the Doctoral Program of Shaanxi Academy of Sciences No. 2020K-30the Natural Science Basic Research Program of Shaanxi No. 2023-JC-QN-0275
6 · The paper itself

Abstract

backgroundGlutathione S-transferases (GSTs) are a crucial class of plant enzymes, playing pivotal roles in plant growth, development, and stress responses. However, studies on the functions and regulatory mechanisms of GSTs in plants remain relatively limited.

resultsThis study aimed to comprehensively identify and analyze GST proteins in rye. A total of 171 rye GST genes were identified and classified into four subfamilies, Tau, Phi, Theta, and Zeta, based on their sequence similarity and structural features. Notably, genes classified under the Tau subfamily were the most abundant at 118, while only one gene was under the Theta subfamily. Subsequent phylogenetic and collinearity analysis revealed 29 tandem duplications and 6 segmental duplication events. There were 13 collinear genes between rye and wheat, maize, and rice, demonstrating the expansion and evolution of the GST gene family. An analysis of the expression profiles of 20 representative ScGST genes in different tissues and under various environmental stresses was performed to further understand the functions and expression patterns of ScGST genes. The results showed that these genes exhibited the highest expression levels in stems, followed by fruits and leaves.

conclusionsThis study provides a comprehensive identity, classification, and analysis of rye GST genes, which offer valuable insights into the functionality and regulatory mechanisms of the GST gene family in rye. Especially, ScGST39 was identified as a candidate gene because it was significantly upregulated under multiple stress conditions, indicating its potential crucial role in plant stress tolerance mechanisms.

Indexed as

Gene Expression Regulation, PlantGlutathione TransferaseMultigene FamilyPhylogenySecaleStress, PhysiologicalGene DuplicationGene Expression ProfilingGenome, PlantPlant ProteinsGlutathione TransferasePlant ProteinsEvolutionGST gene familyRyeScGST39

Identifiers

PMID39604831
PMCPMC11600577

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.