ArticleNature2025
Gut microbiota strain richness is species specific and affects engraftment.
Erratum issuedAbstract read
In one paragraph
Article in Nature, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 45 papers.
0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
45 citing papers in PubMed.
- Probiotic supplementation increases fecal TLR4 agonists without improving disease activity in juvenile idiopathic arthritis: a randomized placebo-controlled trial.Gut microbes · 2026Trial
- 15-strain live biotherapeutic product or same donor fecal microbiota transplant for recurrent Clostridioides difficile infection: a randomized phase 1b trial.Nature medicine · 2026Trial
- Trial
- Detecting microbial engraftment after FMT using placebo sequencing and culture enriched metagenomics to sort signals from noise.Nature communications · 2025Trial
- Microbiome ecology and antibiotic treatment failure: resistance spread, microbial competition and community engineering.Microbial genomics · 2026Review
- Article
- How the social lives of bacteria affect their pangenome.Essays in biochemistry · 2026Review
- Mechanically Active Adhesive Hydrogels Driven by Peptide Self-Assembly for Accelerated Healing of Diverse Wounds.Advanced healthcare materials · 2026Article
- Combining genotoxic gut bacterial strains increases tumor burden and accelerates onset in a germ-free mouse model of colon carcinogenesis.Cell reports · 2026Article
- Microbiota-Derived Metabolites in the Epigenetic Regulation of Redox Homeostasis.Antioxidants (Basel, Switzerland) · 2026Review
- Host-derived Probiotics Enhance Immune Response and Gut Microbiome in the Freshwater Prawn Macrobrachium rosenbergii.Probiotics and antimicrobial proteins · 2026Article
- Strain transmission links human microbiomes along the oral-gut axis and across cohabiting individuals.Cell press blue · 2026Article
- Benchmarking shotgun metagenomics.Nature microbiology · 2026Article
- Chemical suppression of a bacterial immune system revives repressed phages.bioRxiv : the preprint server for biology · 2026Article
- Article
- High-resolution metagenome assembly for modern long reads with myloasm.Nature biotechnology · 2026Article
- Microbes first into the life rafts: preserving microbiomes to secure health in degrading ecosystems.Sustainable microbiology · 2026Article
- The gut as a central hub for multi-organ crosstalk in aging.Cellular and molecular life sciences : CMLS · 2026Review
- Article
- Gut microbiota and metabolic disease risk in youth.Cell reports. Medicine · 2026Review
Corrections and comments
- Erratum issued
Authors and funding
27 authors.
Alice Chen-LiawPrecision Immunology Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0002-3600-4674
Varun AggarwalaPrecision Immunology Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0002-5499-7745
Ilaria MognoPrecision Immunology Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Craig HaiferConcord Clinical School, University of Sydney, Sydney, New South Wales, Australia.
Zhihua LiPrecision Immunology Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Joseph EggersIcahn Genomics Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Drew HelmusDr. Henry D. Janowitz Division of Gastroenterology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Amy HartJanssen R&D, Spring House, PA, USA.
Jan WehkampJanssen R&D, Spring House, PA, USA.
Esi S N Lamousé-SmithJanssen R&D, Spring House, PA, USA.
Robert L KerbyDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.
Federico E ReyDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0002-0239-7780
Jean Frédéric ColombelDr. Henry D. Janowitz Division of Gastroenterology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0001-6472-249X
Michael A KammDepartment of Gastroenterology and Medicine, St. Vincent's Hospital, Melbourne, Victoria, Australia.
Bernat OlleVedanta Biosciences, Cambridge, MA, USA.
Jason M NormanVedanta Biosciences, Cambridge, MA, USA.ORCID 0000-0001-5049-8415
Rajita MenonVedanta Biosciences, Cambridge, MA, USA.
Andrea R WatsonVedanta Biosciences, Cambridge, MA, USA.ORCID 0000-0003-0128-6795
Emily CrossetteVedanta Biosciences, Cambridge, MA, USA.ORCID 0000-0003-3645-2909
Elisabeth M TerveerNetherlands Donor Feces Bank, Leiden University Medical Center, Leiden, The Netherlands.
Josbert J KellerNetherlands Donor Feces Bank, Leiden University Medical Center, Leiden, The Netherlands.
Thomas J BorodyCentre for Digestive Diseases, Sydney, New South Wales, Australia.ORCID 0000-0002-0519-4698
Ari GrinspanDr. Henry D. Janowitz Division of Gastroenterology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Sudarshan ParamsothyConcord Clinical School, University of Sydney, Sydney, New South Wales, Australia.
Nadeem O KaakoushSchool of Medical Sciences, University of New South Wales, Sydney, New South Wales, Australia.ORCID 0000-0003-4017-1077
Marla C DubinskyDr. Henry D. Janowitz Division of Gastroenterology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Jeremiah J FaithPrecision Immunology Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA. jeremiah.faith@mssm.edu.ORCID 0000-0002-2691-4500
Funding
Mount Sinai Medical Scientist Training ProgramT32GM146636 · NIGMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Talia H Swartz · 2022 to 2026
$6.8MThe Influence Of Gut Microbiota Stability In Inflammatory Bowel DiseaseR01DK112978 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Jeremiah James Faith · 2019 to 2026
$5.3MDetermination of mucosal immune responses to, and infection of the gastrointestinal tract by Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2)R01DK123749 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CERUTTI, ANDREA, FAITH, JEREMIAH JAMES · 2020 to 2024
$4.9MUncovering the rules of gut microbiome strain transmissionR01DK124133 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Jeremiah James Faith · 2020 to 2026
$4.2MQuantification of bacterial strain count in the human gut microbiome in health and diseaseF30DK131862 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CHEN-LIAW, ALICE YULAN · 2022 to 2025
$199kNIDDK NIH HHS F30 DK131862NIDDK NIH HHS R01 DK112978NIDDK NIH HHS R01 DK123749NIDDK NIH HHS R01 DK124133NIGMS NIH HHS T32 GM146636
Abstract
Despite the fundamental role of bacterial strain variation in gut microbiota function
Indexed as
Fecal Microbiota TransplantationFecesGastrointestinal MicrobiomeSpecies SpecificityAnimalsBacteriaBiodiversityHumansLakesMetagenomeMiceSoil Microbiology
Identifiers
What OpenQuestion holds
Textmetadata
LicenceTDM
Read underepoch 390
Registered trials
None linked
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.