Evidence map›Paper›PMID 39604449›Full record

ArticleScientific data2024

BFR2: a curated ribosomal reference dataset for benthic foraminifera.

Maria Holzmann, Ngoc-Loi Nguyen, Inès Barrenechea Angeles, Jan Pawlowski

Abstract readDataset
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Biology · 2025
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Maria HolzmannDepartment of Genetics and Evolution, University of Geneva, 1211, Geneva 4, Switzerland. maria.holzmann@unige.ch.ORCID 0000-0003-2460-6210
Ngoc-Loi NguyenDepartment of Paleoceanography, Institute of Oceanology Polish Academy of Sciences, 81-712, Sopot, Poland.ORCID 0000-0001-9452-4830
Inès Barrenechea AngelesDepartment of Geosciences, UiT the Artic University of Norway, 9010, Tromsø, Norway.
Jan PawlowskiDepartment of Genetics and Evolution, University of Geneva, 1211, Geneva 4, Switzerland.

Funding

Fondation Ernst et Lucie Schmidheiny (Ernst and Lucie Schmidheiny Foundation) Exploring abyssal and hadal biodiversity of foraminifera in the North PacificSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) 221959Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) 31003A_159709Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) 31003A_179125Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) 316030_150817
6 · The paper itself

Abstract

Benthic foraminifera are one of the major groups of marine protists that also occur in freshwater and terrestrial habitats. They are widely used to monitor current and past environmental conditions. Over the last three decades, thousands of DNA sequences have been obtained from benthic foraminiferal isolates. The results of this long-term effort are compiled here in the form of the first curated benthic foraminiferal ribosomal reference dataset (BFR2). The present dataset contains over 5000 sequences of a fragment of the 18S rDNA gene, which is recognized as the DNA barcode of foraminifera. The sequences represent 279 species and 204 genera belonging to 91 families. Thirteen percent of these sequences have not been assigned to any morphologically described group and may represent species new to science. Furthermore, forty-five percent of the sequences have not been previously published. The BFR

Indexed as

DNA Barcoding, TaxonomicForaminiferaDNA, RibosomalRNA, Ribosomal, 18SDNA, RibosomalRNA, Ribosomal, 18S

Identifiers

PMID39604449
PMCPMC11603256

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.