Evidence map›Paper›PMID 39604383›Full record

ArticleNature communications2024

Remodelling of Rea1 linker domain drives the removal of assembly factors from pre-ribosomal particles.

Johan Busselez, Geraldine Koenig, Carine Dominique, Torben Klos, Deepika Velayudhan, Piotr Sosnowski, Nils Marechal, Corinne Crucifix, Hugo Gizardin-Fredon, Sarah Cianferani and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Johan BusselezInstitut de Génétique et de Biologie Moléculaire et Cellulaire, Integrated Structural Biology Department, Illkirch, France.ORCID 0000-0002-4078-1265
Geraldine KoenigInstitut de Génétique et de Biologie Moléculaire et Cellulaire, Integrated Structural Biology Department, Illkirch, France.
Carine DominiqueMolecular, Cellular and Developmental Biology Unit (MCD), Centre de Biologie Intégrative (CBI), CNRS, Université de Toulouse, Toulouse, France.
Torben KlosInstitut de Génétique et de Biologie Moléculaire et Cellulaire, Integrated Structural Biology Department, Illkirch, France.ORCID 0000-0003-3094-7273
Deepika VelayudhanInstitut de Génétique et de Biologie Moléculaire et Cellulaire, Integrated Structural Biology Department, Illkirch, France.
Piotr SosnowskiInstitut de Génétique et de Biologie Moléculaire et Cellulaire, Integrated Structural Biology Department, Illkirch, France.ORCID 0000-0003-4902-9560
Nils MarechalInstitut de Génétique et de Biologie Moléculaire et Cellulaire, Integrated Structural Biology Department, Illkirch, France.
Corinne CrucifixInstitut de Génétique et de Biologie Moléculaire et Cellulaire, Integrated Structural Biology Department, Illkirch, France.
Hugo Gizardin-FredonLaboratoire de Spectrométrie de Masse BioOrganique, IPHC UMR 7178, Université de Strasbourg, CNRS, Strasbourg, France.ORCID 0000-0002-3566-7206
Sarah CianferaniLaboratoire de Spectrométrie de Masse BioOrganique, IPHC UMR 7178, Université de Strasbourg, CNRS, Strasbourg, France.ORCID 0000-0003-4013-4129
Benjamin AlbertMolecular, Cellular and Developmental Biology Unit (MCD), Centre de Biologie Intégrative (CBI), CNRS, Université de Toulouse, Toulouse, France.ORCID 0000-0003-2122-6458
Yves HenryMolecular, Cellular and Developmental Biology Unit (MCD), Centre de Biologie Intégrative (CBI), CNRS, Université de Toulouse, Toulouse, France.
Anthony K HenrasMolecular, Cellular and Developmental Biology Unit (MCD), Centre de Biologie Intégrative (CBI), CNRS, Université de Toulouse, Toulouse, France.ORCID 0000-0001-7785-9938
Helgo SchmidtInstitut de Génétique et de Biologie Moléculaire et Cellulaire, Integrated Structural Biology Department, Illkirch, France. schmidth@igbmc.fr.ORCID 0000-0002-8004-8316

Funding

Agence Nationale de la Recherche (French National Research Agency) ANR-19-CE11-0011-01
6 · The paper itself

Abstract

The ribosome maturation factor Rea1 (or Midasin) catalyses the removal of assembly factors from large ribosomal subunit precursors and promotes their export from the nucleus to the cytosol. Rea1 consists of nearly 5000 amino-acid residues and belongs to the AAA+ protein family. It consists of a ring of six AAA+ domains from which the ≈1700 amino-acid residue linker emerges that is subdivided into stem, middle and top domains. A flexible and unstructured D/E rich region connects the linker top to a MIDAS (metal ion dependent adhesion site) domain, which is able to bind the assembly factor substrates. Despite its key importance for ribosome maturation, the mechanism driving assembly factor removal by Rea1 is still poorly understood. Here we demonstrate that the Rea1 linker is essential for assembly factor removal. It rotates and swings towards the AAA+ ring following a complex remodelling scheme involving nucleotide independent as well as nucleotide dependent steps. ATP-hydrolysis is required to engage the linker with the AAA+ ring and ultimately with the AAA+ ring docked MIDAS domain. The interaction between the linker top and the MIDAS domain allows direct force transmission for assembly factor removal.

Indexed as

Protein DomainsRibosomal ProteinsSaccharomyces cerevisiae ProteinsAdenosine TriphosphateATPases Associated with Diverse Cellular ActivitiesModels, MolecularRibosomesSaccharomyces cerevisiaeAdenosine TriphosphateATPases Associated with Diverse Cellular ActivitiesMDN1 protein, S cerevisiaeRibosomal ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID39604383
PMCPMC11603028

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.