Evidence map›Paper›PMID 39602512›Full record

ArticleScience translational medicine2024

Childhood-onset lupus nephritis is characterized by complex interactions between kidney stroma and infiltrating immune cells.

Patrick Danaher, Nicholas Hasle, Elizabeth D Nguyen, Jordan E Roberts, Natalie Rosenwasser, Christian Rickert, Elena W Y Hsieh, Kristen Hayward, Daryl M Okamura, Charles E Alpers and 3 more

Abstract read
In one paragraph

Article in Science translational medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. A population-scale atlas of blood and tissue in lupus nephritis.bioRxiv : the preprint server for biology · 2026
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. CD8Frontiers in immunology · 2026
    Review
  18. Review
  19. Review
  20. CAR-T therapy: Advances in respiratory diseases.Chinese medical journal pulmonary and critical care medicine · 2025
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Patrick DanaherBruker Spatial Biology, Seattle, WA 98109, USA.ORCID 0000-0002-2844-5883
Nicholas HasleDepartment of Pediatrics, University of Washington School of Medicine, Seattle, WA 98195, USA.ORCID 0000-0002-4563-5152
Elizabeth D NguyenDepartment of Pediatrics, University of Washington School of Medicine, Seattle, WA 98195, USA.ORCID 0000-0002-2798-6581
Jordan E RobertsDepartment of Pediatrics, University of Washington School of Medicine, Seattle, WA 98195, USA.ORCID 0000-0002-0976-5697
Natalie RosenwasserDepartment of Pediatrics, University of Washington School of Medicine, Seattle, WA 98195, USA.
Christian RickertDepartment of Immunology and Microbiology, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.ORCID 0000-0001-7396-4335
Elena W Y HsiehDepartment of Immunology and Microbiology, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.ORCID 0000-0003-3969-6597
Kristen HaywardDepartment of Pediatrics, University of Washington School of Medicine, Seattle, WA 98195, USA.
Daryl M OkamuraDepartment of Pediatrics, University of Washington School of Medicine, Seattle, WA 98195, USA.ORCID 0000-0002-3682-9393
Charles E AlpersDepartment of Laboratory Medicine and Pathology, University of Washington School of Medicine, Seattle, WA 98195, USA.ORCID 0000-0002-1859-1772
Robyn C ReedDepartment of Laboratory Medicine and Pathology, University of Washington School of Medicine, Seattle, WA 98195, USA.ORCID 0000-0002-8523-2139
Sarah K BaxterSonoma Biotherapeutics, Seattle, WA 98119, USA.
Shaun W JacksonDepartment of Pediatrics, University of Washington School of Medicine, Seattle, WA 98195, USA.ORCID 0000-0002-7024-5252

Funding

RESEARCH TRAINING IN RHEUMATOLOGYT32AR007108 · NIAMS · UNIVERSITY OF WASHINGTON · PI Shaun Jackson, Tomas M Mustelin · 1986 to 2026
$6.6M
Mechanistic insights into systemic lupus erythematosus (SLE) pathogenesis from inborn errors of immunityR01AR073938 · NIAMS · SEATTLE CHILDREN'S HOSPITAL · PI Shaun William Jackson · 2019 to 2026
$4.0M
Impact of Loss-of-function NADPH Oxidase Variants on B-Cell Activation in SLER01AR075813 · NIAMS · SEATTLE CHILDREN'S HOSPITAL · PI JACKSON, SHAUN WILLIAM · 2021 to 2025
$2.8M
Interrogating The Biology Of Human Lupus Nephritis Using Single Cell Resolution Spatial TranscriptomicsR01DK136980 · NIDDK · SEATTLE CHILDREN'S HOSPITAL · PI Shaun William Jackson · 2024 to 2026
$2.5M
Mentoring the next generation of researchers in pediatric autoimmunityK24AR085177 · NIAMS · SEATTLE CHILDREN'S HOSPITAL · PI Shaun William Jackson · 2025 to 2026
$424k
NIAMS NIH HHS K24 AR085177NIAMS NIH HHS R01 AR073938NIAMS NIH HHS R01 AR075813NIAMS NIH HHS T32 AR007108NIDDK NIH HHS R01 DK136980
6 · The paper itself

Abstract

Children with systemic lupus erythematosus (SLE) are at increased risk of developing kidney disease, termed childhood-onset lupus nephritis (cLN). Single-cell transcriptomics of dissociated kidney tissue has advanced our understanding of LN pathogenesis, but loss of spatial resolution prevents interrogation of in situ cellular interactions. Using a technical advance in spatial transcriptomics, we generated a spatially resolved, single-cell resolution atlas of kidney tissue from eight patients with cLN and four control individuals. Annotated cells were assigned to 30 reference cell types, including major kidney subsets and infiltrating immune cells. Analysis of spatial distribution demonstrated that individual immune lineages localized to specific regions in cLN kidneys, including myeloid cells that trafficked to inflamed glomeruli and B cells that clustered within tubulointerstitial immune hotspots. Gene expression varied as a function of tissue location, demonstrating how incorporation of spatial data can provide new insights into the immunopathogenesis of SLE. Alterations in immune phenotypes were accompanied by parallel changes in gene expression by resident kidney stromal cells. However, there was little correlation between histologic scoring of cLN disease activity and glomerular cell transcriptional signatures at the level of individual glomeruli. Last, we identified modules of spatially correlated gene expression with predicted roles in induction of inflammation and the development of tubulointerstitial fibrosis. Single-cell spatial transcriptomics allowed insights into the molecular heterogeneity of cLN, paving the way toward more targeted and personalized treatment approaches.

Indexed as

KidneyLupus NephritisStromal CellsAdolescentAge of OnsetChildFemaleGene Expression ProfilingHumansKidney GlomerulusMaleSingle-Cell AnalysisTranscriptome

Identifiers

PMID39602512
PMCPMC11708815

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.