Evidence map›Paper›PMID 39601417›Full record

ArticleActa crystallographica. Section F, Structural biology communications2024

Crystal structure of glutamyl-tRNA synthetase from Helicobacter pylori.

Dylan E Davis, Jesuferanmi P Ayanlade, David T Laseinde, Sandhya Subramanian, Hannah Udell, Donald J Lorimer, David M Dranow, Thomas E Edwards, Peter J Myler, Oluwatoyin A Asojo

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Architecture ofProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Dylan E DavisCollege of Arts and Science, Dartmouth College, Hanover, NH 03755, USA.ORCID 0009-0001-2728-6972
Jesuferanmi P AyanladeDartmouth Cancer Center, One Medical Center Drive, Lebanon, NH 03756, USA.ORCID 0009-0009-7554-5084
David T LaseindeDartmouth Cancer Center, One Medical Center Drive, Lebanon, NH 03756, USA.
Sandhya SubramanianCenter for Global Infectious Disease Research, Seattle Children's Research Institute, 307 Westlake Avenue, North Suite 500, Seattle, WA 98109, USA.
Hannah UdellSeattle Structural Genomics Center for Infectious Diseases, Seattle, Washington, USA.
Donald J LorimerSeattle Structural Genomics Center for Infectious Diseases, Seattle, Washington, USA.ORCID 0000-0002-9638-8083
David M DranowCenter for Global Infectious Disease Research, Seattle Children's Research Institute, 307 Westlake Avenue, North Suite 500, Seattle, WA 98109, USA.ORCID 0000-0003-1871-2455
Thomas E EdwardsCenter for Global Infectious Disease Research, Seattle Children's Research Institute, 307 Westlake Avenue, North Suite 500, Seattle, WA 98109, USA.
Peter J MylerCenter for Global Infectious Disease Research, Seattle Children's Research Institute, 307 Westlake Avenue, North Suite 500, Seattle, WA 98109, USA.ORCID 0000-0002-0056-0513
Oluwatoyin A AsojoDartmouth Cancer Center, One Medical Center Drive, Lebanon, NH 03756, USA.ORCID 0000-0002-4043-2700

Funding

Centers for Research on Structural Biology of Infectious Diseases: Universal Influenza Vaccine Research75N93022C00036 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI STAKER, BART · 2022 to 2025
$21.7M
An Eiger2 XE 9M detector for the NYSBC-operated NYX beamline at NSLS-IIS10OD030394 · OD · NEW YORK STRUCTURAL BIOLOGY CENTER · PI BATTAILE, KEVIN P · 2021 to 2021
$1.8M
Program for Oncology Workforce Education and Research Experience at DartmouthR25CA250956 · NCI · DARTMOUTH COLLEGE · PI FIERING, STEVEN · 2020 to 2024
$841k
NCI NIH HHS R25 CA250956NCI NIH HHS R25CA250956NIAID NIH HHS 75N93022C00036NIH HHS S10 OD030394
6 · The paper itself

Abstract

Helicobacter pylori is one of the most common bacterial infections; over two-thirds of the world's population is infected by early childhood. Persistent H. pylori infection results in gastric ulcers and cancers. Due to drug resistance, there is a need to develop alternative treatments to clear H. pylori. The Seattle Structural Genomics Center for Infectious Disease (SSGCID) conducts structure-function analysis of potential therapeutic targets from H. pylori. Glutamyl-tRNA synthetase (GluRS) is essential for tRNA aminoacylation and is under investigation as a bacterial drug target. The SSGCID produced, crystallized and determined the apo structure of H. pylori GluRS (HpGluRS). HpGluRS has the prototypical bacterial GluRS topology and has similar binding sites and tertiary structures to other bacterial GluRS that are promising drug targets. Residues involved in glutamate binding are well conserved in comparison with Pseudomonas aeruginosa GluRS (PaGluRS), which has been studied to develop promising new inhibitors for P. aeruginosa. These structural similarities can be exploited for drug discovery and repurposing to generate new antibacterials to clear persistent H. pylori infection and reduce gastric ulcers and cancer.

Indexed as

cancergastric ulcersglutamyl-tRNA synthetaseinfectious diseasesSeattle Structural Genomics Center for Infectious Diseaseundergraduate education and training

Identifiers

PMID39601417
PMCPMC11614106

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.