Evidence map›Paper›PMID 39599915›Full record

ArticleViruses2024

Investigation of Polymorphisms Induced by the Solo Long Terminal Repeats (Solo-LTRs) in Porcine Endogenous Retroviruses (ERVs).

Cai Chen, Zhanyu Du, Yao Zheng, Hong Chen, Ahmed A Saleh, Naisu Yang, Mengli Wang, Phiri Azele, Xiaoyan Wang, Chengyi Song

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Cai ChenCollege of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China.ORCID 0000-0001-6789-6006
Zhanyu DuCollege of Grassland Resources, Institute of Qinghai-Tibetan Plateau, Southwest Minzu University, Chengdu 610225, China.ORCID 0000-0001-5880-8537
Yao ZhengCollege of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China.
Hong ChenCollege of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China.
Ahmed A SalehCollege of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China.ORCID 0000-0003-1314-8066
Naisu YangCollege of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China.
Mengli WangCollege of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China.
Phiri AzeleMinistry of Fisheries and Livestock, Animal Science and Technology, Zambia Institute of Animal Health, Mazabuka 670237, Zambia.ORCID 0009-0009-0555-8322
Xiaoyan WangCollege of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China.ORCID 0000-0001-8521-2974
Chengyi SongCollege of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China.ORCID 0000-0002-0488-4718

Funding

the High-end Talent Support Program of Yangzhou University to Chengyi Song NAthe Open Project Program of International Joint Research Laboratory in Universities of Jiangsu Province of China for Domestic Animal Germplasm Resources and Genetic Improvement IJRLD-KF202209the Revitalization of Seed Industry (JBGS) in Jiangsu province JBGS(2021)028)
6 · The paper itself

Abstract

Homologous recombination events take place between the 5' and 3' long terminal repeats (LTRs) of ERVs, resulting in the generation of solo-LTR, which can cause solo-LTR-associated polymorphism across different genomes. In the current study, specific criteria were established for the filtration of solo-LTRs, resulting in an average of 5630 solo-LTRs being identified in 21 genomes. Subsequently, a protocol was developed for detecting solo-LTR polymorphisms in the pig genomes, resulting in the discovery of 927 predicted solo-LTR polymorphic sites. Following verification and filtration processes, 603 highly reliable solo-LTR polymorphic sites were retained, involving 446 solo-LTR presence sites (solo-LTR

Indexed as

Endogenous RetrovirusesPolymorphism, GeneticTerminal Repeat SequencesAnimalsSwinegenomic variationpolymorphic sitespopulation geneticssolo-LTR

Identifiers

PMID39599915
PMCPMC11598996

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.