Evidence map›Paper›PMID 39599911›Full record

ArticleViruses2024

Single-Cell Transcriptomics of Human Tonsils Reveals Nicotine Enhances HIV-1-Induced NLRP3 Inflammasome and Mitochondrial Activation.

Nadine Schrode, Trinisia Fortune, Aislinn M Keane, Jesse F Mangold, Benjamin Tweel, Kristin G Beaumont, Talia H Swartz

Abstract read
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Observational
  2. Review
  3. Advances in Single-Cell Sequencing for Infectious Diseases: Progress and Perspectives.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Nadine SchrodeDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.ORCID 0000-0001-5315-6816
Trinisia FortuneDivision of Infectious Diseases, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Aislinn M KeaneGraduate School of Biomedical Sciences, Division of Infectious Diseases, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Jesse F MangoldMedical Scientist Training Program, Graduate School of Biomedical Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.ORCID 0000-0002-7871-9969
Benjamin TweelDepartment of Otolaryngology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Kristin G BeaumontDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Talia H SwartzDivision of Infectious Diseases, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.ORCID 0000-0003-1572-045X

Funding

Mount Sinai Medical Scientist Training ProgramT32GM146636 · NIGMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Talia H Swartz · 2022 to 2026
$6.8M
Modeling HIV Microglia-Associated Infection and Inflammation in a Chimeric Mouse BrainR01DA054526 · NIDA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI AKBARIAN, SCHAHRAM, CHEN, BENJAMIN K · 2021 to 2025
$3.7M
Targeting the NLRP3 Inflammasome to Mitigate Neuroinflammation and HIV Persistence in the CNS: Mechanisms and Therapeutic StrategiesRF1MH141600 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI AKBARIAN, SCHAHRAM, CHEN, BENJAMIN K · 2025 to 2025
$3.6M
Cell-lineage specific epigenomic determinants of HIV latency in humanized mouse brain and bloodR01MH134319 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Schahram Akbarian, BENJAMIN K CHEN · 2023 to 2026
$2.9M
Nicotine and NLRP3 Inflammasome in HIV-1-Associated CNS InflammationR01DA059876 · NIDA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Schahram Akbarian, BENJAMIN K CHEN · 2024 to 2026
$2.3M
Elucidating the mechanisms of cannabinoids on HIV-1 infection and inflammasome activationR01DA052255 · NIDA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SWARTZ, TALIA H · 2020 to 2024
$2.1M
Purinergic signaling in HIV-1 infection and inflammationK08AI120806 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SWARTZ, TALIA H · 2016 to 2020
$878k
NIAID NIH HHS K08 AI120806NIDA NIH HHS R01 DA052255NIDA NIH HHS R01 DA054526NIDA NIH HHS R01 DA059876NIGMS NIH HHS T32 GM146636NIH HHS 1R01DA052255-03A1NIH HHS 1R01DA054526-02A1NIH HHS 1R01DA059876-02A1NIH HHS 1R01MH134319-01A1NIMH NIH HHS R01 MH134319NIMH NIH HHS RF1 MH141600
6 · The paper itself

Abstract

backgroundHIV-1 infection, even with effective antiretroviral therapy (ART), is associated with chronic inflammation and immune dysfunction, contributing to long-term health complications. Nicotine use, prevalent among people with HIV (PWH), is known to exacerbate immune activation and disease progression, but the precise biological mechanisms remain to be fully understood. This study sought to uncover the synergistic effects of HIV-1 infection and nicotine on immune cell function, focusing on beneficial insights into NLRP3 inflammasome activation, oxidative stress, and mitochondrial pathways.

methodsHuman tonsil explants were infected with HIV-1 and exposed to nicotine. Single-cell RNA sequencing was used to profile immune cell populations and gene expression linked to inflammasome activation, oxidative stress, and mitochondrial function. Gene set enrichment analysis (GSEA) and synergy assessments were conducted to investigate how nicotine modulates immune responses in the context of HIV.

resultsThe combination of HIV infection and nicotine exposure significantly increased NLRP3 inflammasome activation, thioredoxin, and components of oxidative phosphorylation.

conclusionsThis study highlights how the combined effects of HIV-1 and nicotine offer valuable insights into immune modulation, opening doors for future therapeutic strategies. Targeting the NLRP3 inflammasome and addressing nicotine use may contribute to improved outcomes for PWH.

Indexed as

HIV-1HIV InfectionsInflammasomesMitochondriaNicotineNLR Family, Pyrin Domain-Containing 3 ProteinPalatine TonsilSingle-Cell AnalysisHumansOxidative StressTranscriptomeInflammasomesNicotineNLR Family, Pyrin Domain-Containing 3 ProteinNLRP3 protein, humanHIV-1mitochondrial dysfunctionnicotineNLRP3 inflammasomeoxidative stress

Identifiers

PMID39599911
PMCPMC11598941

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.