Evidence map›Paper›PMID 39599805›Full record

ArticleViruses2024

Genetic Spatio-Temporal Analysis of Hepatitis D Virus Infection in Western Brazilian Amazon.

Tárcio P Roca, Jackson A S Queiroz, Ana M Passos-Silva, Adrhyan Araújo, Barbara V Lago, Francisco C A Mello, Juan M V Salcedo, Deusilene Vieira, Livia M Villar

Abstract read
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Tárcio P RocaLaboratório de Hepatites Virais, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro 21040-360, RJ, Brazil.ORCID 0000-0003-0203-0409
Jackson A S QueirozLaboratório de Virologia Molecular, Fundação Oswaldo Cruz Rondônia, Porto Velho 76812-245, RO, Brazil.
Ana M Passos-SilvaLaboratório de Virologia Molecular, Fundação Oswaldo Cruz Rondônia, Porto Velho 76812-245, RO, Brazil.
Adrhyan AraújoLaboratório de Virologia Molecular, Fundação Oswaldo Cruz Rondônia, Porto Velho 76812-245, RO, Brazil.
Barbara V LagoLaboratório de Hepatites Virais, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro 21040-360, RJ, Brazil.ORCID 0000-0002-9173-6309
Francisco C A MelloLaboratório de Hepatites Virais, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro 21040-360, RJ, Brazil.
Juan M V SalcedoLaboratório de Virologia Molecular, Fundação Oswaldo Cruz Rondônia, Porto Velho 76812-245, RO, Brazil.
Deusilene VieiraLaboratório de Virologia Molecular, Fundação Oswaldo Cruz Rondônia, Porto Velho 76812-245, RO, Brazil.
Livia M VillarLaboratório de Hepatites Virais, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro 21040-360, RJ, Brazil.ORCID 0000-0001-7644-8969

Funding

CAPES 001FAPERJ E-26/210.033/2023Fundação Oswaldo Cruz Rondônia, the Inovação na Amazônia Notice VPPIS-003-FIO-20-2-75-30PROEP Notice VPGDI-008-FIO-21-2-17
6 · The paper itself

Abstract

The Brazilian Amazon region is a highly endemic area for hepatitis Delta and has areas that are difficult to access. Understanding the dynamics of HDV transmission in these remote locations is important for elucidating the routes of infection. To investigate this, a molecular analysis of HDV was conducted to assess the spatio-temporal dynamics of HDV cases. Between 2010 and 2023, 35 patients were recruited from the Viral Hepatitis Outpatient Clinic in Rondônia, Brazil. Conventional PCR was used to amplify the complete HDV genome followed by nucleotide sequencing via the Sanger method. The HDV genotype was determined using maximum likelihood phylogenetic reconstruction. A Skygrid coalescent approach with a Relaxed Random Walk phylogeographic model was used for the spatio-temporal analysis. Most individuals were males (21/35), with a median age of 39 years. HDV-3 was identified in all samples (35/35; 100%). The tMRCA was estimated to be 1824, with a substitution rate of 8.2 × 10

Indexed as

GenotypeHepatitis DHepatitis Delta VirusPhylogenySpatio-Temporal AnalysisAdultBrazilFemaleGenome, ViralHumansMaleMiddle AgedPhylogeographyRNA, ViralYoung AdultRNA, Viralgenetic variabilityhepatitis deltaphylogeography

Identifiers

PMID39599805
PMCPMC11598896

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.