Evidence map›Paper›PMID 39599775›Full record

ArticleViruses2024

Decoding Critical Targets and Signaling Pathways in EBV-Mediated Diseases Using Large Language Models.

Jingwen Yu, Yaohao Wang, Haidong Wang, Zhi Wei, Yonggang Pei

Abstract read
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jingwen YuSchool of Public Health and Emergency Management, Southern University of Science and Technology, Shenzhen 518055, China.ORCID 0009-0008-2721-4865
Yaohao WangSchool of Public Health and Emergency Management, Southern University of Science and Technology, Shenzhen 518055, China.
Haidong WangSchool of Public Health and Emergency Management, Southern University of Science and Technology, Shenzhen 518055, China.
Zhi WeiDepartment of Computer Science, New Jersey Institute of Technology, Newark, NJ 07102, USA.
Yonggang PeiSchool of Public Health and Emergency Management, Southern University of Science and Technology, Shenzhen 518055, China.ORCID 0000-0001-7296-8772

Funding

the Guangdong Natural Science Foundation 2024A1515013126the Science, Technology and Innovation Commission of Shenzhen Municipality JCYJ20230807093208017
6 · The paper itself

Abstract

Epstein-Barr virus (EBV), a member of the gamma herpesvirus, is the first identified human oncovirus and is associated with various malignancies. Understanding the intricate interactions between EBV antigens and cellular pathways is crucial to unraveling the molecular mechanisms in EBV-mediated diseases. However, fully elucidating EBV-host interactions and the associated pathogenesis remains a significant challenge. In this study, we employed large language models (LLMs) to screen 36,105 EBV-relevant scientific publications and summarize the current literature landscape on various EBV-associated diseases like Burkitt lymphoma (BL), diffuse large B-cell lymphoma (DLBCL), nasopharyngeal carcinoma (NPC), and so on. LLM-generated data indicate that the most-studied EBV-associated pathways are enriched in immune response, apoptosis, cell growth, and replication. The analyses of protein-protein interactions (PPIs) reveal three principal EBV-related protein clusters: TP53-centered apoptotic factors, EBV-associated transcription factors, and immune response elements. Utilizing our dataset and public databases, we demonstrated that BLLF3-targeted TLR2-associated factors are effective diagnostic markers for DLBCL. Next, we confirmed the co-expression of LMP1-targeted calcium pathway factors in BL. Finally, we demonstrated the correlation and co-expression of LMP1-induced

Indexed as

Epstein-Barr Virus InfectionsHerpesvirus 4, HumanSignal TransductionBurkitt LymphomaHost-Pathogen InteractionsHumansLymphoma, Large B-Cell, DiffuseNasopharyngeal CarcinomaProtein Interaction MapsEBVEBV-mediated diseasesLLMsignaling pathways

Identifiers

PMID39599775
PMCPMC11598986

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.