Evidence map›Paper›PMID 39596650›Full record

ArticleGenes2024

Inference of Genetic Diversity, Population Structure, and Selection Signatures in Xiangxi White Buffalo of China Through Whole-Genome Resequencing.

Chenqi Bian, Yang Luo, Jianbo Li, Huan Cheng, Fang He, Hongfeng Duan, Zulfiqar Ahmed, Chuzhao Lei, Kangle Yi

Abstract read
In one paragraph

Article in Genes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Chenqi BianHunan Institute of Animal and Veterinary Science, Changsha 410131, China.ORCID 0009-0007-0629-5427
Yang LuoHunan Institute of Animal and Veterinary Science, Changsha 410131, China.ORCID 0000-0001-7659-6777
Jianbo LiHunan Institute of Animal and Veterinary Science, Changsha 410131, China.
Huan ChengHunan Institute of Animal and Veterinary Science, Changsha 410131, China.
Fang HeHunan Institute of Animal and Veterinary Science, Changsha 410131, China.
Hongfeng DuanHunan Institute of Animal and Veterinary Science, Changsha 410131, China.
Zulfiqar AhmedDepartment of Livestock and Poultry Production, Faculty of Veterinary and Animal Sciences, University of Poonch Rawalakot, Rawalakot 12350, Pakistan.ORCID 0000-0001-5082-1227
Chuzhao LeiKey Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A and F University, Yangling 712100, China.ORCID 0000-0003-1647-1037
Kangle YiHunan Institute of Animal and Veterinary Science, Changsha 410131, China.

Funding

the Agriculture Research System of Herbivore in Hunan Province, China, and Furong Plan in Hunan Province, China 2022the National Beef Cattle and Yak Industrial Technology System CARS-37
6 · The paper itself

Abstract

(1) Background: Buffaloes are crucial livestock species for food and service in tropical and subtropical regions. Buffalo genetics, particularly in indigenous Chinese breeds such as the Xiangxi white buffalo (XWB), remains an intriguing area of study due to its unique traits and regional significance. (2) Methods: This investigation utilized the whole-genome sequences of twenty XWBs (newly sequenced), along with eighty published whole-genome sequences of other buffalo breeds (including Guizhou white buffalo, river buffalo, and Chinese buffalo in the Yangtze River). Using whole-genome sequencing analysis technology, the population structure, genomic diversity, and selection signatures of XWB were determined. (3) Results: This study revealed that the XWB, being phylogenetically positioned in the middle and lower reaches of the Yangtze River, exhibited substantial genomic diversity. Employing four selection sweep detection methods (CLR, iHS, π-ratio, and

Indexed as

BuffaloesSelection, GeneticWhole Genome SequencingAnimalsBreedingChinaGenetic VariationGenomePhenotypePhylogenyPolymorphism, Single Nucleotidegenetic diversitypopulation structureselection signatureswhole-genome resequencingXiangxi white buffalo

Identifiers

PMID39596650
PMCPMC11594040

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.