Evidence map›Paper›PMID 39596639›Full record

ArticleGenes2024

Insights into Mitochondrial Rearrangements and Selection in Accipitrid Mitogenomes, with New Data on

Jumaporn Sonongbua, Thanyapat Thong, Thitipong Panthum, Trifan Budi, Worapong Singchat, Ekaphan Kraichak, Aingorn Chaiyes, Narongrit Muangmai, Prateep Duengkae, Ratiwan Sitdhibutr and 2 more

Erratum issuedAbstract read
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Article in Genes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Jumaporn SonongbuaAnimal Genomics and Bioresource Research Unit (AGB Research Unit), Faculty of Science, Kasetsart University, Bangkok 10900, Thailand.
Thanyapat ThongAnimal Genomics and Bioresource Research Unit (AGB Research Unit), Faculty of Science, Kasetsart University, Bangkok 10900, Thailand.
Thitipong PanthumAnimal Genomics and Bioresource Research Unit (AGB Research Unit), Faculty of Science, Kasetsart University, Bangkok 10900, Thailand.ORCID 0000-0001-7147-1684
Trifan BudiAnimal Genomics and Bioresource Research Unit (AGB Research Unit), Faculty of Science, Kasetsart University, Bangkok 10900, Thailand.
Worapong SingchatAnimal Genomics and Bioresource Research Unit (AGB Research Unit), Faculty of Science, Kasetsart University, Bangkok 10900, Thailand.
Ekaphan KraichakAnimal Genomics and Bioresource Research Unit (AGB Research Unit), Faculty of Science, Kasetsart University, Bangkok 10900, Thailand.ORCID 0000-0002-8437-2180
Aingorn ChaiyesAnimal Genomics and Bioresource Research Unit (AGB Research Unit), Faculty of Science, Kasetsart University, Bangkok 10900, Thailand.
Narongrit MuangmaiDepartment of Fishery Biology, Faculty of Fisheries, Kasetsart University, Bangkok 10900, Thailand.ORCID 0000-0001-7954-7348
Prateep DuengkaeAnimal Genomics and Bioresource Research Unit (AGB Research Unit), Faculty of Science, Kasetsart University, Bangkok 10900, Thailand.
Ratiwan SitdhibutrRaptor Rehabilitation Unit, Kasetsart University Veterinary Teaching Hospital Kamphaengsaen Campus, Nakhon Pathom 73140, Thailand.
Chaiyan KasorndorkbuaRaptor Rehabilitation Unit, Kasetsart University Veterinary Teaching Hospital Kamphaengsaen Campus, Nakhon Pathom 73140, Thailand.ORCID 0000-0002-2138-9954
Kornsorn SrikulnathAnimal Genomics and Bioresource Research Unit (AGB Research Unit), Faculty of Science, Kasetsart University, Bangkok 10900, Thailand.ORCID 0000-0002-5985-7258

Funding

Faculty of Science, Kasetsart University 6501.0901.1/336Graduate grants scholarship of Faculty of Science, Kasetsart University 6417400239Kasetsart University Research and Development Institute (KURDI) FF(KU)25.64Kasetsart University Research and Development Institute (KURDI) FF(KU)51.67National Science and Technology Development Agency JRA-CO-2564-14003-THNational Science and Technology Development Agency NSTDA P-19-52238Postdoctoral Researcher award at Kasetsart UniversityRaptor conservation medicine research plan of Faculty of Veterinary Medicine, Kasetsart UniversityRaptor Research Fund for Conservation, Faculty of Veterinary Medicine, Kasetsart University
6 · The paper itself

Abstract

BACKGROUND/

objectivesAccipitridae mitogenomes exhibit unique structural variations, including duplicated control regions (CRs) that undergo gradual degeneration into pseudo-CRs, revealing a complex evolutionary landscape. However, annotation of this characteristic in a subset of accipitrid genomes is lacking. Due to the taxonomic diversity of Accipitridae and the presence of understudied species, comprehensive mitogenomic studies are essential. This study sought to expand and investigate the evolutionary characteristics of Accipitridae mitogenomes.

methodsA comparative analysis was conducted using the newly acquired complete mitogenomes of Haliastur indus and Accipiter badius poliopsis along with 22 available accipitrid mitogenomes. Codon usage, selective pressure, phylogenetic relationships, and structural variations were comparatively analyzed.

resultsAccipitrid mitogenomes showed a strong AT bias with adenine preference. All protein-coding genes (PCGs) were under purifying selection. The ATP8 gene exhibited relaxed purifying selection on codon usage patterns and showed high genetic variation. Selection for the ATP8 gene was specific to certain clades of accipitrids. Gene order re-examination revealed both non-degenerate CRs and highly degenerate CR2 fragments in the Accipitridae family. Non-degenerate CRs were found in early diverging species, such as Elanus caeruleus and Pernis ptilorhynchus orientalis, while more recent lineages had highly degenerate CR2 fragments with missing conserved element. Repeat motifs and sequence variations were observed in the functional CR.

conclusionsThese findings suggest that the ATP8 gene reflects metabolic adaptations, while CRs indicate potential diversification of these accipitrid species. This study provides valuable insights into mitochondrial genome evolution within the Accipitridae family.

Indexed as

Codon UsageGenome, MitochondrialPhylogenySelection, GeneticAnimalsCatfishesEvolution, MolecularFalconiformesGene Rearrangementconcerted evolutionduplicationevolutionphylogenyraptors

Identifiers

PMID39596639
PMCPMC11593783

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.