Evidence map›Paper›PMID 39596616›Full record

ArticleGenes2024

In Silico Identification of the Laccase-Encoding Gene in the Transcriptome of the Amazon River Prawn

Gabriel Monteiro de Lima, Fernando Araújo Abrunhosa, Bruna Ramalho Maciel, Ítalo Lutz, Janieli do Socorro Amorim da Luz Sousa, Carlos Murilo Tenório Maciel, Cristiana Ramalho Maciel

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Gabriel Monteiro de LimaInstituto de Estudos Costeiros, Campus Universitário de Bragança, Universidade Federal do Pará, Alameda Leandro Ribeiro s/n, Bragança 68600-000, PR, Brazil.ORCID 0000-0002-2988-1580
Fernando Araújo AbrunhosaInstituto de Estudos Costeiros, Campus Universitário de Bragança, Universidade Federal do Pará, Alameda Leandro Ribeiro s/n, Bragança 68600-000, PR, Brazil.
Bruna Ramalho MacielInstituto de Estudos Costeiros, Campus Universitário de Bragança, Universidade Federal do Pará, Alameda Leandro Ribeiro s/n, Bragança 68600-000, PR, Brazil.
Ítalo LutzInstituto de Estudos Costeiros, Campus Universitário de Bragança, Universidade Federal do Pará, Alameda Leandro Ribeiro s/n, Bragança 68600-000, PR, Brazil.ORCID 0000-0001-8664-6440
Janieli do Socorro Amorim da Luz SousaInstituto de Estudos Costeiros, Campus Universitário de Bragança, Universidade Federal do Pará, Alameda Leandro Ribeiro s/n, Bragança 68600-000, PR, Brazil.
Carlos Murilo Tenório MacielInstituto de Estudos Costeiros, Campus Universitário de Bragança, Universidade Federal do Pará, Alameda Leandro Ribeiro s/n, Bragança 68600-000, PR, Brazil.
Cristiana Ramalho MacielInstituto de Estudos Costeiros, Campus Universitário de Bragança, Universidade Federal do Pará, Alameda Leandro Ribeiro s/n, Bragança 68600-000, PR, Brazil.ORCID 0000-0003-4320-6714

Funding

Banco da Amazônia 5101 2022/231Conselho Nacional de Desenvolvimento Científico e Tecnológico 407952/2023-3Coordenação de Aperfeiçoamento de Pessoal de Nível Superior 88887.511314/2020-00Fundação Amazônia de Amparo a Estudos e Pesquisas 173/2023
6 · The paper itself

Abstract

background

objectiveIn this study, we conducted an in silico identification and characterization of the

methodsWe analyzed the transcriptomes of the hepatopancreas from adult

resultsA complete open reading frame (ORF) of the laccase protein was identified in all datasets, comprising 609 amino acids. The top 40 similarity hits corresponded exclusively to crustaceans such as prawns, crayfish, and crabs (86.3-51.4%), while the highest divergence was observed in relation to fungi, plants, and bacteria. Three conserved domains were detected, along with the complete set of copper-binding centers (T1Cu, T2Cu, and T3Cu). A notable variable residue was methionine, suggesting a reduced redox potential in

conclusionThese findings, combined with recent reports on the nutritional requirements of

Indexed as

LaccasePalaemonidaeTranscriptomeAnimalsArthropod ProteinsComputer SimulationHepatopancreasLigninPhylogenyArthropod ProteinsLaccaseLigninfunctional genomehepatopancreasligninlignocellulolytic fibers

Identifiers

PMID39596616
PMCPMC11593427

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.