Evidence map›Paper›PMID 39596552›Full record

ArticleGenes2024

The Chilean COVID-19 Genomics Network Biorepository: A Resource for Multi-Omics Studies of COVID-19 and Long COVID in a Latin American Population.

Iskra A Signore, Gerardo Donoso, Pamela Bocchieri, Eduardo A Tobar-Calfucoy, Cristian E Yáñez, Laura Carvajal-Silva, Andrea X Silva, Carola Otth, Claudio Cappelli, Héctor Valenzuela Jorquera and 27 more

Abstract read
In one paragraph

Article in Genes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors.

Iskra A SignoreDepartment of Anatomic Pathology, Faculty of Medicine, University of Chile, Santiago 8380453, Chile.ORCID 0000-0002-7256-3043
Gerardo DonosoService of Anatomic Pathology, University of Chile Clinical Hospital (HCUCH), Santiago 8380453, Chile.ORCID 0009-0006-1168-2643
Pamela BocchieriDepartment of Anatomic Pathology, Faculty of Medicine, University of Chile, Santiago 8380453, Chile.
Eduardo A Tobar-CalfucoyHuman Genetics Program, Institute of Biomedical Science (ICBM), Faculty of Medicine, University of Chile, Santiago 8380453, Chile.ORCID 0000-0002-4686-8468
Cristian E YáñezHuman Genetics Program, Institute of Biomedical Science (ICBM), Faculty of Medicine, University of Chile, Santiago 8380453, Chile.
Laura Carvajal-SilvaHuman Genetics Program, Institute of Biomedical Science (ICBM), Faculty of Medicine, University of Chile, Santiago 8380453, Chile.
Andrea X SilvaAUSTRAL-Omics, Vice Rector's Office for Research, Development and Artistic Creation, Austral University of Chile, Valdivia 5090000, Chile.
Carola OtthInstitute of Clinical Microbiology, Faculty of Medicine, Austral University of Chile, Valdivia 5090000, Chile.
Claudio CappelliAUSTRAL-Omics, Vice Rector's Office for Research, Development and Artistic Creation, Austral University of Chile, Valdivia 5090000, Chile.
Héctor Valenzuela JorqueraAUSTRAL-Omics, Vice Rector's Office for Research, Development and Artistic Creation, Austral University of Chile, Valdivia 5090000, Chile.
Daniela Zapata-ContrerasSchool of Medicine, Magallanes University, Punta Arenas 6210005, Chile.ORCID 0009-0006-2337-7937
Yolanda Espinosa-ParrillaSchool of Medicine, Magallanes University, Punta Arenas 6210005, Chile.ORCID 0000-0002-5441-3113
Paula Zúñiga-PachecoSchool of Medicine, Magallanes University, Punta Arenas 6210005, Chile.
Macarena Fuentes-GuajardoDepartment of Medical Technology, Faculty of Health Sciences, University of Tarapacá, Arica 1010197, Chile.
Virginia A Monardes-RamírezClinical Laboratory of the Technical Area of Molecular Biology, Salvador Hospital, Santiago 7500922, Chile.
Pia Kochifas VelasquezClinical Laboratory of the Technical Area of Molecular Biology, Salvador Hospital, Santiago 7500922, Chile.
Christian A MuñozDepartment of Medical Technology, Faculty of Health Sciences, University of Antofagasta, Antofagasta 1240000, Chile.ORCID 0000-0003-3959-1269
Cristina DoradorLaboratory of Microbial Complexity and Functional Ecology, Antofagasta Institute & Biotechnology Department, University of Antofagasta, Antofagasta 1240000, Chile.ORCID 0000-0002-7641-2154
Jonathan García-ArayaLaboratory of Microbial Complexity and Functional Ecology, Antofagasta Institute & Biotechnology Department, University of Antofagasta, Antofagasta 1240000, Chile.
Claudia P Campillay-VélizLaboratory of Molecular Virology, Faculty of Marine Sciences and Biological Resources, University of Antofagasta, Antofagasta 1240000, Chile.
Cesar EcheverriaLaboratory of Molecular Biology, Nanomedicine and Genomics, Faculty of Medicine, University of Atacama, Copiapó 1533601, Chile.
Rodolfo Alejandro SantanderEmergency Public Assistance Hospital, Santiago 8330145, Chile.
Leslie C CerpaDepartment of Basic and Clinical Oncology (DOBC), Faculty of Medicine, University of Chile, Santiago 8380453, Chile.ORCID 0000-0002-9525-389X
Matías F MartínezDepartment of Basic and Clinical Oncology (DOBC), Faculty of Medicine, University of Chile, Santiago 8380453, Chile.ORCID 0000-0003-0498-6447
Luis Abel QuiñonesDepartment of Basic and Clinical Oncology (DOBC), Faculty of Medicine, University of Chile, Santiago 8380453, Chile.ORCID 0000-0002-7967-5320
Eduardo Roberto Lamoza GalleguillosLaboratory of Chemical Carcinogenesis and Pharmacogenetics (CQF), Department of Basic-Clinical Oncology (DOBC), Faculty of Medicine, University of Chile, Santiago 8380453, Chile.ORCID 0009-0009-1174-5730
Juan Saez HidalgoDepartment of Computer Science, Faculty of Physical and Mathematical Sciences, University of Chile, Santiago 8370458, Chile.ORCID 0000-0001-7991-0864
Estefanía Nova-LampertiClinical Biochemistry and Immunology Department, Faculty of Pharmacy, University of Concepción, Concepción 4070383, Chile.ORCID 0000-0002-7673-0013
Sergio SanhuezaCenter of Excellence in Translational Medicine, Faculty of Medicine, University of The Frontier, Temuco 4781176, Chile.
Annesi GiacamanInstitute of Veterinary Preventive Medicine, Faculty of Veterinary Sciences, Austral University of Chile, Valdivia 5090000, Chile.ORCID 0000-0002-7748-8580
Gerardo Acosta-JamettInstitute of Veterinary Preventive Medicine, Faculty of Veterinary Sciences, Austral University of Chile, Valdivia 5090000, Chile.ORCID 0000-0002-9645-3551
Cristóbal VerdugoInstitute of Veterinary Preventive Medicine, Faculty of Veterinary Sciences, Austral University of Chile, Valdivia 5090000, Chile.
Anita PlazaInstitute of Animal Pathology, Faculty of Veterinary Sciences, Austral University of Chile, Valdivia 5090000, Chile.
Claudio VerdugoCenter for Surveillance and Evolution of Infectious Diseases, Austral University of Chile, Valdivia 5090000, Chile.
Carolina SelmanArturo López Pérez Foundation, Santiago 7500921, Chile.
Ricardo Alejandro VerdugoDepartment of Basic and Clinical Oncology (DOBC), Faculty of Medicine, University of Chile, Santiago 8380453, Chile.ORCID 0000-0001-5668-5449
Alicia ColomboDepartment of Anatomic Pathology, Faculty of Medicine, University of Chile, Santiago 8380453, Chile.

Funding

High-titer helper virus-free HSV-1 vectorsR01AG021193 · NIA · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI GELLER, ALFRED I. · 2003 to 2007
$1.3M
Agencia Nacional de Investigación y Desarrollo ANID COVID0961, ANID COVID0789, ANID COVID1005, ANID COVID0585, ACT210085, FONDECYT 1170446, FONDECYT 1211480Interuniversity Center for Healthy Aging RED21193Ministry of Education MAG1995University of Concepción VRID220.085.041-INI
6 · The paper itself

Abstract

Although a lack of diversity in genetic studies is an acknowledged obstacle for personalized medicine and precision public health, Latin American populations remain particularly understudied despite their heterogeneity and mixed ancestry. This gap extends to COVID-19 despite its variability in susceptibility and clinical course, where ethnic background appears to influence disease severity, with non-Europeans facing higher hospitalization rates. In addition, access to high-quality samples and data is a critical issue for personalized and precision medicine, and it has become clear that the solution lies in biobanks. The creation of the Chilean COVID-19 Biorepository reported here addresses these gaps, representing the first nationwide multicentric Chilean initiative. It operates under rigorous biobanking standards and serves as one of South America's largest COVID cohorts. A centralized harmonization strategy was chosen and included unified standard operating procedures, a sampling coding system, and biobanking staff training. Adults with confirmed SARS-CoV-2 infection provided broad informed consent. Samples were collected to preserve blood, plasma, buffy coat, and DNA. Quality controls included adherence to the standard preanalytical code, incident reporting, and DNA concentration and absorbance ratio 260/280 assessments. Detailed sociodemographic, health, medication, and preexisting condition data were gathered. In five months, 2262 participants were enrolled, pseudonymized, and sorted by disease severity. The average Amerindian ancestry considering all participant was 44.0% [SD 15.5%], and this value increased to 61.2% [SD 19.5%] among those who self-identified as Native South Americans. Notably, 279 participants self-identified with one of 12 ethnic groups. High compliance (>90%) in all assessed quality controls was achieved. Looking ahead, our team founded the COVID-19 Genomics Network (C19-GenoNet) focused on identifying genetic factors influencing SARS-CoV-2 outcomes. In conclusion, this bottom-up collaborative effort aims to promote the integration of Latin American populations into global genetic research and welcomes collaborations supporting this endeavor. Interested parties are invited to explore collaboration opportunities through our catalog, accessible online.

Indexed as

Biological Specimen BanksCOVID-19GenomicsSARS-CoV-2AdultAgedChileFemaleHumansLatin AmericaMaleMiddle AgedMultiomicsbiobank networksbiorepositoryCOVID-19genetic diversityLatin American populationsunderrepresented populations

Identifiers

PMID39596552
PMCPMC11593408

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.