Single Laboratory Evaluation of the Q20+ Nanopore Sequencing Kit for Bacterial Outbreak Investigations.

Maria Hoffmann, Jay Hee Jang, Sandra M Tallent, Narjol Gonzalez-Escalona

Abstract read

In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it

0cells of the map it votes in

4citing papers in PubMed

–field-weighted citation impact

1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

The lung microbiome in childhood-onset severe neuromuscular disease with respiratory insufficiency: rationale, current evidence, and opportunities for oxford nanopore long-read sequencing.Molecular and cellular pediatrics · 2026
Review
Performance of mechanically sheared DNA in multiplexed Oxford Nanopore sequencing forMicrobial genomics · 2026
Article
A novel and accelerated method for integrated alignment and variant calling from short and long reads.Frontiers in bioinformatics · 2025
Article
Centriflaken: An automated data analysis pipeline for assembly and in silico analyses of foodborne pathogens from metagenomic samples.PloS one · 2025
Article

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Maria HoffmannGenomics Development and Applications Branch, Division of Food Safety Genomics, Office of Applied Microbiology and Technology, Office of Laboratory Operations and Applied Science, Human Foods Program, Food & Drug Administration, College Park, MD 20740, USA.

Jay Hee JangGenomics Development and Applications Branch, Division of Food Safety Genomics, Office of Applied Microbiology and Technology, Office of Laboratory Operations and Applied Science, Human Foods Program, Food & Drug Administration, College Park, MD 20740, USA.

Sandra M TallentGenomics Development and Applications Branch, Division of Food Safety Genomics, Office of Applied Microbiology and Technology, Office of Laboratory Operations and Applied Science, Human Foods Program, Food & Drug Administration, College Park, MD 20740, USA.

Narjol Gonzalez-EscalonaGenomics Development and Applications Branch, Division of Food Safety Genomics, Office of Applied Microbiology and Technology, Office of Laboratory Operations and Applied Science, Human Foods Program, Food & Drug Administration, College Park, MD 20740, USA.ORCID 0000-0003-4568-0022

Funding

United States Food and Drug Administration FDA Foods Program Intramural Funds

6 · The paper itself

Abstract

Leafy greens are a significant source of produce-related Shiga toxin-producing

Indexed as

Disease OutbreaksNanopore SequencingDNA, BacterialEscherichia coli InfectionsFoodborne DiseasesGenome, BacterialHigh-Throughput Nucleotide SequencingHumansPhylogenyPilot ProjectsPolymorphism, Single NucleotideSequence Analysis, DNAShiga-Toxigenic Escherichia coliDNA, Bacterialcomplete genomesfoodborne pathogenlongread sequencingnanopore sequencingsingle laboratory evaluation

Identifiers

PMID39595947

DOI10.3390/ijms252211877

PMCPMC11594029

What OpenQuestion holds

Textmetadata

LicenceCC BY

Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.