Evidence map›Paper›PMID 39595587›Full record

ArticleBiomolecules2024

KnowVID-19: A Knowledge-Based System to Extract Targeted COVID-19 Information from Online Medical Repositories.

Muzzamil Aziz, Ioana Popa, Amjad Zia, Andreas Fischer, Sabih Ahmed Khan, Amirreza Fazely Hamedani, Abdul R Asif

Abstract read
In one paragraph

Article in Biomolecules, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Muzzamil AzizFuture Networks, eScience Group, Gesellschaft für Wissenschaftliche Datenverarbeitung mbH Göttingen (GWDG), 37077 Göttingen, Germany.
Ioana PopaInstitute for Clinical Chemistry, University Medical Center Göttingen, George-August-University, 37073 Göttingen, Germany.ORCID 0009-0000-0310-9261
Amjad ZiaInstitute for Clinical Chemistry, University Medical Center Göttingen, George-August-University, 37073 Göttingen, Germany.ORCID 0000-0002-3034-3181
Andreas FischerInstitute for Clinical Chemistry, University Medical Center Göttingen, George-August-University, 37073 Göttingen, Germany.
Sabih Ahmed KhanFuture Networks, eScience Group, Gesellschaft für Wissenschaftliche Datenverarbeitung mbH Göttingen (GWDG), 37077 Göttingen, Germany.
Amirreza Fazely HamedaniFuture Networks, eScience Group, Gesellschaft für Wissenschaftliche Datenverarbeitung mbH Göttingen (GWDG), 37077 Göttingen, Germany.
Abdul R AsifInstitute for Clinical Chemistry, University Medical Center Göttingen, George-August-University, 37073 Göttingen, Germany.

Funding

Federal Ministry of Education and Research 16KIS1292
6 · The paper itself

Abstract

We present KnowVID-19, a knowledge-based system that assists medical researchers and scientists in extracting targeted information quickly and efficiently from online medical literature repositories, such as PubMed, PubMed Central, and other biomedical sources. The system utilizes various open-source machine learning tools, such as GROBID, S2ORC, and BioC to streamline the processes of data extraction and data mining. Central to the functionality of KnowVID-19 is its keyword-based text classification process, which plays a pivotal role in organizing and categorizing the extracted information. By employing machine learning techniques for keyword extraction-specifically RAKE, YAKE, and KeyBERT-KnowVID-19 systematically categorizes publication data into distinct topics and subtopics. This topic structuring enhances the system's ability to match user queries with relevant research, improving both the accuracy and efficiency of the search results. In addition, KnowVID-19 leverages the NetworkX Python library to construct networks of the most relevant terms within publications. These networks are then visualized using Cytoscape software, providing a graphical representation of the relationships between key terms. This network visualization allows researchers to easily track emerging trends and developments related to COVID-19, long COVID, and associated topics, facilitating more informed and user-centered exploration of the scientific literature. KnowVID-19 also provides an interactive web application with an intuitive, user-centered interface. This platform supports seamless keyword searching and filtering, as well as a visual network of term associations to help users quickly identify emerging research trends. The responsive design and network visualization enables efficient navigation and access to targeted COVID-19 literature, enhancing both the user experience and the accuracy of data-driven insights.

Indexed as

COVID-19Data MiningKnowledge BasesMachine LearningSARS-CoV-2HumansPubMedSoftwareartificial intelligenceCOVID-19knowledge-based systemlong COVIDnatural language processingtext miningweb crawling and scraping

Identifiers

PMID39595587
PMCPMC11592241

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.