Evidence map›Paper›PMID 39594700›Full record

ArticleCancers2024

Multi-Omic Characterization of Single Cells and Cell-Free Components Detected in the Cerebrospinal Fluid of Patients with Leptomeningeal Disease.

Stephanie N Shishido, Amelia Marvit, Doanna Pham, Theresa Luo, Liya Xu, Jeremy Mason, Saul J Priceman, Jana Portnow, Peter Kuhn

Abstract read
In one paragraph

Article in Cancers, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Stephanie N ShishidoConvergent Science Institute for Cancer, Michelson Center, University of Southern California, Los Angeles, CA 90089, USA.
Amelia MarvitConvergent Science Institute for Cancer, Michelson Center, University of Southern California, Los Angeles, CA 90089, USA.
Doanna PhamConvergent Science Institute for Cancer, Michelson Center, University of Southern California, Los Angeles, CA 90089, USA.
Theresa LuoConvergent Science Institute for Cancer, Michelson Center, University of Southern California, Los Angeles, CA 90089, USA.
Liya XuThe Vision Center at Children's Hospital Los Angeles, Los Angeles, CA 90027, USA.ORCID 0000-0002-5501-2039
Jeremy MasonConvergent Science Institute for Cancer, Michelson Center, University of Southern California, Los Angeles, CA 90089, USA.ORCID 0000-0002-5933-5003
Saul J PricemanDepartment of Hematology and Hematopoietic Cell Transplantation, City of Hope, 1500 East Duarte Road, Duarte, CA 91010, USA.
Jana PortnowDepartment of Medical Oncology & Therapeutics Research, City of Hope, 1500 East Duarte Road, Duarte, CA 91010, USA.
Peter KuhnConvergent Science Institute for Cancer, Michelson Center, University of Southern California, Los Angeles, CA 90089, USA.ORCID 0000-0003-2629-4505

Funding

USC/NORRIS COMPREHENSIVE CANCER CENTER (CORE) SUPPORTP30CA014089 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Fumito Ito · 1985 to 2026
$181.4M
California Institute for Regenerative Medicine CIRM CLIN2-11574NCI NIH HHS P30 CA014089
6 · The paper itself

Abstract

BACKGROUND/

objectivesUp to 30% of patients with breast cancers will develop brain or leptomeningeal metastases, and this risk is especially high with HER2-positive cancers. For patients with central nervous system metastases, cerebrospinal fluid (CSF) liquid biopsies are a promising opportunity to monitor disease, inform treatment, and predict prognosis. This pilot study investigated CSF liquid biopsy analytes from three patients diagnosed with central nervous system metastases based on imaging but not confirmed via clinical cytology.

methodsThe detection of cellular analytes with the non-enrichment high-definition single-cell assay (HDSCA3.0) workflow was compared between the CSF and matched peripheral blood (PB) samples.

resultsCirculating tumor cells (CTCs) were detected in the CSF but not the PB and were subsequently molecularly characterized using single-cell genomics and targeted multiplexed proteomics to reveal a clonal population of phenotypically heterogeneous cells. There was a lack of concordance in the copy number alteration profiles between CTCs and cell-free DNA (cfDNA) in the CSF. Extracellular vesicle surface marker analysis in CSF revealed a prominent signal among tetraspanins (CD9/CD63/CD81), with CD81 exhibiting the highest signal across all patients.

conclusionsThe data presented suggest that CSF could be a useful tool for diagnosing and assessing disease severity.

Indexed as

brain metastasiscerebrospinal fluidcirculating tumor cellsleptomeningeal diseaseliquid biopsy

Identifiers

PMID39594700
PMCPMC11592257

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.