Evidence map›Paper›PMID 39592921›Full record

ArticleBMC genomic data2024

Transcriptomic data of peach varieties with different chilling requirement levels.

Weihan Zhang, Yayun Sun, Haiyan Li, Yuepeng Han, Baoxiong Wan, Liao Liao

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC genomic data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Weihan ZhangGuangxi Key Laboratory of Germplasm Innovation and Utilization of Specialty Commercial Crops in North Guangxi, Guangxi Academy of Specialty Crops, Guilin, Guangxi, 541004, China.
Yayun SunState Key Laboratory of Plant Diversity and Specialty Crops, Wuhan Botanical Garden of Chinese Academy of Sciences, Wuhan, 430074, China.
Haiyan LiGuangxi Key Laboratory of Germplasm Innovation and Utilization of Specialty Commercial Crops in North Guangxi, Guangxi Academy of Specialty Crops, Guilin, Guangxi, 541004, China.
Yuepeng HanState Key Laboratory of Plant Diversity and Specialty Crops, Wuhan Botanical Garden of Chinese Academy of Sciences, Wuhan, 430074, China.
Baoxiong WanGuangxi Key Laboratory of Germplasm Innovation and Utilization of Specialty Commercial Crops in North Guangxi, Guangxi Academy of Specialty Crops, Guilin, Guangxi, 541004, China. wan77118@163.com.
Liao LiaoState Key Laboratory of Plant Diversity and Specialty Crops, Wuhan Botanical Garden of Chinese Academy of Sciences, Wuhan, 430074, China. liao168000@wbgcas.cn.

Funding

China Agriculture Research System CARS-30Key Special Project of Intergovernmental International Cooperation of the National Key R&D Program of China 2023YFE0125100Opening Project of Guangxi Key Laboratory of Germplasm Innovation and Utilization of Specialty Commercial Crops in North Guangxi GASCKF202406
6 · The paper itself

Abstract

objectivesPeach is a deciduous tree widely cultivated in temperate and subtropical regions that requires a process of bud endodormancy to produce normal flowering and fruiting. This release requires a certain accumulation of cold, named chilling requirement (CR). CR is genotype dependent and with varies levels among different species and accessions. Thus, we collected the bud transcriptomic data of two peaches with different CR levels and conduct a series standard basic analysis. The peach bud transcriptomic data we gathered provides a valuable dataset for exploring the relationships between gene expression and peach CR levels. DATA DESCRIPTION: We extracted and sequenced the RNA of different CR peach buds at the same status in three endodormancy stages. Each stages have three biological replicates. A total of 18 RNA-seq libraries were obtained and mapped to the reference genome after quality control. The gene expression level was normalized by two methods (TPM and FPKM). Differentially expressed genes (DEGs) analysis revealed that a total of 2,481 unique genes with an absolute value of log2 fold change (FC) greater than 1.0. Homologous functional annotation of these DEGs were conducted which provided further information for CR potential related genes identified and functional genomics studies.

Indexed as

Cold TemperatureGene Expression Regulation, PlantPrunus persicaTranscriptomeGene Expression ProfilingChilling requirementPeachRNA-seqTranscriptomic

Identifiers

PMID39592921
PMCPMC11600755

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.