Evidence map›Paper›PMID 39592860›Full record

ArticleNature cell biology2025

The enhancer module of Integrator controls cell identity and early neural fate commitment.

Yingjie Zhang, Connor M Hill, Kelsey A Leach, Luca Grillini, Sandra Deliard, Sarah R Offley, Martina Gatto, Francis Picone, Avery Zucco, Alessandro Gardini

Abstract read
In one paragraph

Article in Nature cell biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yingjie Zhang *The Wistar Institute, Philadelphia, PA, USA.
Connor M Hill *The Wistar Institute, Philadelphia, PA, USA.
Kelsey A LeachThe Wistar Institute, Philadelphia, PA, USA.ORCID 0000-0002-0816-5155
Luca GrilliniThe Wistar Institute, Philadelphia, PA, USA.
Sandra DeliardThe Wistar Institute, Philadelphia, PA, USA.
Sarah R OffleyThe Wistar Institute, Philadelphia, PA, USA.
Martina GattoThe Wistar Institute, Philadelphia, PA, USA.
Francis PiconeThe Wistar Institute, Philadelphia, PA, USA.ORCID 0009-0008-3097-3731
Avery ZuccoThe Wistar Institute, Philadelphia, PA, USA.
Alessandro GardiniThe Wistar Institute, Philadelphia, PA, USA. agardini@wistar.org.ORCID 0000-0003-0413-2855

Funding

Tumor Microenvironment and MetastasisP30CA010815 · NCI · WISTAR INSTITUTE · PI Dario C Altieri · 1985 to 2026
$75.9M
TRAINING PROGRAM IN BASIC CANCER RESEARCHT32CA009171 · NCI · WISTAR INSTITUTE · PI Alessandro Gardini · 1985 to 2026
$15.3M
Role of an Integrator-EGR axis in the regulation of myeloid enhancers (Admin Supp)R01HL141326 · NHLBI · WISTAR INSTITUTE · PI GARDINI, ALESSANDRO · 2019 to 2023
$2.7M
Mechanisms of Epigenetic Plasticity in PDACR01CA252223 · NCI · GEORGETOWN UNIVERSITY · PI YI, CHUNLING · 2021 to 2025
$2.4M
The molecular function of the oncogenic NAB2-STAT6 fusion proteinF31CA265257 · NCI · UNIVERSITY OF PENNSYLVANIA · PI HILL, CONNOR MACKENZIE · 2021 to 2024
$101k
G. Harold and Leila Y. Mathers Foundation (G. Harold & Leila Y. Mathers Foundation) MF-2207-03076NCI NIH HHS F31 CA265257NCI NIH HHS P30 CA010815NCI NIH HHS R01 CA252223NCI NIH HHS T32 CA009171NHLBI NIH HHS R01 HL141326U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) T32 CA09171
6 · The paper itself

Abstract

Lineage-specific transcription factors operate as master orchestrators of developmental processes by activating select cis-regulatory enhancers and proximal promoters. Direct DNA binding of transcription factors ultimately drives context-specific recruitment of the basal transcriptional machinery that comprises RNA polymerase II (RNAPII) and a host of polymerase-associated multiprotein complexes, including the metazoan-specific Integrator complex. Integrator is primarily known to modulate RNAPII processivity and to surveil RNA integrity across coding genes. Here we describe an enhancer module of Integrator that directs cell fate specification by promoting epigenetic changes and transcription factor binding at neural enhancers. Depletion of Integrator's INTS10 subunit upends neural traits and derails cells towards mesenchymal identity. Commissioning of neural enhancers relies on Integrator's enhancer module, which stabilizes SOX2 binding at chromatin upon exit from pluripotency. We propose that Integrator is a functional bridge between enhancers and promoters and a main driver of early development, providing new insight into a growing family of neurodevelopmental syndromes.

Indexed as

Cell LineageEnhancer Elements, GeneticNeural Stem CellsNeurogenesisAnimalsCell DifferentiationChromatinEpigenesis, GeneticGene Expression Regulation, DevelopmentalHumansMicePromoter Regions, GeneticRNA Polymerase IISOXB1 Transcription FactorsChromatinRNA Polymerase IISox2 protein, mouseSOXB1 Transcription Factors

Identifiers

PMID39592860
PMCPMC11752693

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.