Evidence map›Paper›PMID 39592744›Full record

ArticleNature plants2024

Co-option of plant gene regulatory network in nutrient responses during terrestrialization.

Yating Dong, Shalini Krishnamoorthi, Grace Zi Hao Tan, Zheng Yong Poh, Daisuke Urano

Abstract read
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In one paragraph

Article in Nature plants, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yating DongTemasek Life Sciences Laboratory, Singapore, Singapore.
Shalini KrishnamoorthiTemasek Life Sciences Laboratory, Singapore, Singapore.ORCID http://orcid.org/0000-0002-8501-035X
Grace Zi Hao TanTemasek Life Sciences Laboratory, Singapore, Singapore.ORCID http://orcid.org/0009-0003-8141-0633
Zheng Yong PohTemasek Life Sciences Laboratory, Singapore, Singapore.
Daisuke UranoTemasek Life Sciences Laboratory, Singapore, Singapore. daisuke@tll.org.sg.ORCID http://orcid.org/0000-0003-4541-1076

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant responses to nitrate, phosphate and sucrose form a complex molecular network crucial for terrestrial adaptation. However, the origins, functional diversity and evolvability of this network during plant terrestrialization remain scarcely understood. Here we compare the transcriptomic response to these nutrients in the bryophyte Marchantia polymorpha and the streptophyte alga Klebsormidium nitens. We show that the largely species-specific nutrient response pattern is driven by gene regulatory network (GRN) alterations. Intriguingly, while pathways governing the GRNs exhibit modest conservation, M. polymorpha GRNs exhibit more regulatory connections through the redeployment of ancient transcription factor CSD. In M. polymorpha, functional analyses reveal the involvement of pre-existing cytokinin machineries in downstream targets, orchestrating plastic morpho-physiological responses to nutrient status. Our findings implicate the genetic co-option events facilitating successful land plant establishment.

Indexed as

Gene Expression Regulation, PlantGene Regulatory NetworksMarchantiaCharophyceaeNitratesNutrientsPhosphatesSucroseTranscriptomeNitratesNutrientsPhosphatesSucrose

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.