Evidence map›Paper›PMID 39592612›Full record

ArticleScientific data2024

Single-Cell Transcriptomic Dataset of RPGR-associated Retinitis Pigmentosa Patient-Derived Retinal Organoids.

Ting Li, Yuting Ma, Yun Cheng, Yingke Zhao, Zhixu Qiu, Hongli Liu, Daowei Zhang, Jiawen Wu, Junfeng Li, Shenghai Zhang and 1 more

Abstract read
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Review
  3. Pathogenic mechanisms ofFrontiers in genetics · 2026
    Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Ting Li *Qingdao Institute, College of Medicine, Fudan University, Qingdao, 266500, China.ORCID 0000-0003-3788-7058
Yuting Ma *College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.ORCID 0000-0002-3333-8724
Yun ChengDepartment of Ophthalmology, Eye and ENT Hospital, College of Medicine, Fudan University, Shanghai, 200000, China.
Yingke ZhaoDepartment of Ophthalmology, Eye and ENT Hospital, College of Medicine, Fudan University, Shanghai, 200000, China.
Zhixu QiuBGI Genomics, Shenzhen, 518083, China.
Hongli LiuDepartment of Ophthalmology, Eye and ENT Hospital, College of Medicine, Fudan University, Shanghai, 200000, China.
Daowei ZhangDepartment of Ophthalmology, Eye and ENT Hospital, College of Medicine, Fudan University, Shanghai, 200000, China.
Jiawen WuDepartment of Ophthalmology, Eye and ENT Hospital, College of Medicine, Fudan University, Shanghai, 200000, China.
Junfeng LiDepartment of Ophthalmology, Eye and ENT Hospital, College of Medicine, Fudan University, Shanghai, 200000, China.
Shenghai ZhangDepartment of Ophthalmology, Eye and ENT Hospital, College of Medicine, Fudan University, Shanghai, 200000, China. zsheent@163.com.
Jihong WuQingdao Institute, College of Medicine, Fudan University, Qingdao, 266500, China. jihongwu@fudan.edu.cn.

Funding

National Natural Science Foundation of China (National Science Foundation of China) 82271085, 82171055
6 · The paper itself

Abstract

X-linked retinitis pigmentosa (XLRP) is a severe hereditary retinal disorder marked by progressive vision loss due to photoreceptor dysfunction. The retinitis pigmentosa GTPase regulator (RPGR) gene, responsible for most XLRP cases, encodes a protein crucial for the transport of visual signal proteins between the photoreceptor inner and outer segments. However, the mechanism of RPGR mutation causing photoreceptor disorder is not clear and effective treatments remain elusive. This study utilized retinal organoids (ROs) derived from normal and RPGR-mutant human induced pluripotent stem cells (hiPSC) at four developmental stages (40, 90, 150, and 200 days). Single-cell RNA sequencing (scRNA-seq) was conducted on 71,096 cells, including 33,839 cells from the control group and 37,257 cells from the RPGR group. Key retinal cell types were identified and the obtained scRNAseq dataset was validated reliable and high -quality. This study has provided data resources and references for exploring the mechanism of RPGR-related retinal degeneration and support the development of targeted therapies.

Indexed as

Eye ProteinsInduced Pluripotent Stem CellsOrganoidsRetinitis PigmentosaSingle-Cell AnalysisTranscriptomeHumansMutationRetinaEye ProteinsRPGR protein, human

Identifiers

PMID39592612
PMCPMC11599861

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.