Evidence map›Paper›PMID 39592111›Full record

ArticleBriefings in bioinformatics2024

Deciphering the genetic interplay between depression and dysmenorrhea: a Mendelian randomization study.

Shuhe Liu, Zhen Wei, Daniel F Carr, John Moraros

Abstract read
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Article in Briefings in bioinformatics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Shuhe LiuDepartment of Biological Sciences, School of Science, Xi'an Jiaotong-Liverpool University, 111 Ren'ai Road, Suzhou Industrial Park, Suzhou, Jiangsu 215123, China.ORCID 0009-0005-7843-8429
Zhen WeiDepartment of Biological Sciences, School of Science, Xi'an Jiaotong-Liverpool University, 111 Ren'ai Road, Suzhou Industrial Park, Suzhou, Jiangsu 215123, China.
Daniel F CarrInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Crown Street, L7 8TX Liverpool, United Kingdom.
John MorarosDepartment of Biological Sciences, School of Science, Xi'an Jiaotong-Liverpool University, 111 Ren'ai Road, Suzhou Industrial Park, Suzhou, Jiangsu 215123, China.

Funding

AI University Research Centre through XJTLU Key Programme Special Fund KSF-P-02National Natural Science Foundation of China 61971422Xi'an Jiaotong-Liverpool University FOSSP231101XJTLU Key Program Special Fund KSF-T-01
6 · The paper itself

Abstract

backgroundThis study aims to explore the link between depression and dysmenorrhea by using an integrated and innovative approach that combines genomic, transcriptomic, and protein interaction data/information from various resources.

methodsA two-sample, bidirectional, and multivariate Mendelian randomization (MR) approach was applied to determine causality between dysmenorrhea and depression. Genome-wide association study (GWAS) data were used to identify genetic variants associated with both dysmenorrhea and depression, followed by colocalization analysis of shared genetic influences. Expression quantitative trait locus (eQTL) data were analyzed from public databases to pinpoint target genes in relevant tissues. Additionally, a protein-protein interaction (PPI) network was constructed using the STRING database to analyze interactions among identified proteins.

resultsMR analysis confirmed a significant causal effect of depression on dysmenorrhea ['odds ratio' (95% confidence interval) = 1.51 (1.19, 1.91), P = 7.26 × 10-4]. Conversely, no evidence was found to support a causal effect of dysmenorrhea on depression (P = .74). Genetic analysis, using GWAS and eQTL data, identified single-nucleotide polymorphisms in several genes, including GRK4, TRAIP, and RNF123, indicating that depression may impact reproductive function through these genetic pathways, with a detailed picture presented by way of analysis in the PPI network. Colocalization analysis highlighted rs34341246(RBMS3) as a potential shared causal variant.

conclusionsThis study suggests that depression significantly affects dysmenorrhea and identifies key genes and proteins involved in this interaction. The findings underline the need for integrated clinical and public health approaches that screen for depression among women presenting with dysmenorrhea and suggest new targeted preventive strategies.

Indexed as

DepressionDysmenorrheaGenome-Wide Association StudyMendelian Randomization AnalysisPolymorphism, Single NucleotideQuantitative Trait LociFemaleGenetic Predisposition to DiseaseHumansProtein Interaction MapsdepressiondysmenorrheageneticsgenomicsMendelian randomizationmental health

Identifiers

PMID39592111
PMCPMC11596086

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.