Evidence map›Paper›PMID 39591478›Full record

ArticlePloS one2024

The pesticides carbofuran and picloram alter the diversity and abundance of soil microbial communities.

Jaqueline Alves Senabio, Rafael Correia da Silva, Daniel Guariz Pinheiro, Leonardo Gomes de Vasconcelos, Marcos Antônio Soares

Abstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jaqueline Alves SenabioDepartment of Botany and Ecology, Institute of Biosciences, Federal University of Mato Grosso, Cuiabá, Mato Grosso, Brazil.
Rafael Correia da SilvaCenter for Molecular Biology and Genetic Engineering, State University of Campinas, Campinas, SP, Brazil.
Daniel Guariz PinheiroFaculty of Agricultural and Veterinary Sciences, Paulista State University, Jaboticabal, SP, Brazil.ORCID 0000-0001-7062-5936
Leonardo Gomes de VasconcelosDepartment of Chemistry, Federal University of Mato Grosso, Cuiabá, Mato Grosso, Brazil.
Marcos Antônio SoaresDepartment of Botany and Ecology, Institute of Biosciences, Federal University of Mato Grosso, Cuiabá, Mato Grosso, Brazil.ORCID 0000-0002-8938-3188

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many countries widely use pesticides to increase crop productivity in agriculture. However, their excessive and indiscriminate use contaminates soil and other environments and affects edaphic microbial communities. We aimed to examine how the pesticides carbofuran and picloram affect the structure and functionality of soil microbiota using cultivation-independent methods. Total DNA was extracted from microcosms (treated or not with pesticides) for amplification and metabarcoding sequencing for bacteria (16S gene) and fungi (28S gene) using Illumina-MiSeq platform. Data analysis resulted in 6,772,547 valid reads from the sequencing, including 3,450,815 amplicon sequences from the V3-V4 regions of the 16S gene and 3,321,732 sequences from the 28S gene. A total of 118 archaea, 6,931 bacteria, and 1,673 fungi taxonomic operating units were annotated with 97% identity in 24 soil samples. The most abundant phyla were Proteobacteria, Actinobacteria, Acidobacteria, Firmicutes, Chloroflexi, Euryarchaeaota, and Ascomycota. The pesticides reduced the diversity and richness and altered the composition of soil microbial communities and the ecological interactions among them. Picloram exerted the strongest influence. Metabarcoding data analysis from soil microorganisms identified metabolic functions involved in resistance and degradation of contaminants, such as glutathione S-transferase. The results provided evidence that carbofuran and picloram shaped the soil microbial community. Future investigations are required to unravel the mechanisms by which soil microorganisms degrade pesticides.

Indexed as

CarbofuranMicrobiotaPesticidesSoil MicrobiologyArchaeaBacteriaBiodiversityFungiRNA, Ribosomal, 16SSoilSoil PollutantsCarbofuranPesticidesRNA, Ribosomal, 16SSoilSoil Pollutants

Identifiers

PMID39591478
PMCPMC11594414

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.