Evidence map›Paper›PMID 39591469›Full record

ArticlePLoS neglected tropical diseases2024

Genetic differentiation of Oncomelania hupensis robertsoni in hilly regions of China: Using the complete mitochondrial genome.

Jing Song, Hongqiong Wang, Shizhu Li, Peijun Qian, Wenya Wang, Meifen Shen, Zongya Zhang, Jihua Zhou, Chunying Li, Zaogai Yang and 3 more

Erratum issuedAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Jing SongDepartment of Schistosomiasis Control and Prevention, Yunnan Institute of Endemic Disease Control and Prevention, Dali, People's Republic of China.
Hongqiong WangDepartment of Schistosomiasis Control and Prevention, Yunnan Institute of Endemic Disease Control and Prevention, Dali, People's Republic of China.
Shizhu LiNational Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, National Institute of Parasitic Diseases at Chinese Center for Disease Control and Prevention, Chinese Center for Tropical Diseases Research, NHC Key Laboratory of Parasite and Vector Biology, WHO Collaborating Center for Tropical Diseases, National Center for International Research on Tropical Diseases, Shanghai, People's Republic of China.
Peijun QianNational Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, National Institute of Parasitic Diseases at Chinese Center for Disease Control and Prevention, Chinese Center for Tropical Diseases Research, NHC Key Laboratory of Parasite and Vector Biology, WHO Collaborating Center for Tropical Diseases, National Center for International Research on Tropical Diseases, Shanghai, People's Republic of China.
Wenya WangNational Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, National Institute of Parasitic Diseases at Chinese Center for Disease Control and Prevention, Chinese Center for Tropical Diseases Research, NHC Key Laboratory of Parasite and Vector Biology, WHO Collaborating Center for Tropical Diseases, National Center for International Research on Tropical Diseases, Shanghai, People's Republic of China.
Meifen ShenDepartment of Schistosomiasis Control and Prevention, Yunnan Institute of Endemic Disease Control and Prevention, Dali, People's Republic of China.
Zongya ZhangDepartment of Schistosomiasis Control and Prevention, Yunnan Institute of Endemic Disease Control and Prevention, Dali, People's Republic of China.
Jihua ZhouDepartment of Schistosomiasis Control and Prevention, Yunnan Institute of Endemic Disease Control and Prevention, Dali, People's Republic of China.
Chunying LiSchool of Public Health, Kunming Medical University, Kunming, People's Republic of China.
Zaogai YangSchool of Public Health, Kunming Medical University, Kunming, People's Republic of China.
Yuwan HaoSchool of Public Health, Kunming Medical University, Kunming, People's Republic of China.
Chunhong DuDepartment of Schistosomiasis Control and Prevention, Yunnan Institute of Endemic Disease Control and Prevention, Dali, People's Republic of China.
Yi DongDepartment of Schistosomiasis Control and Prevention, Yunnan Institute of Endemic Disease Control and Prevention, Dali, People's Republic of China.ORCID 0000-0002-9777-4111

Funding

Dali Prefecture Science and Technology Plan ProjectNational Key Research and Development Program of ChinaOpen project of Key Laboratory of Parasite and Vector Biology of National Health CommissionOpen Project of Yunnan Provincial Key Laboratory of Public Health and Biosafety
6 · The paper itself

Abstract

objectiveOncomelania hupensis robertsoni is the only intermediate host of Schistosoma japonicum in hilly regions of south-west China, which plays a key role during the transmission of Schistosomiasis. This study aimed to sequence the complete mitochondrial genome of Oncomelania hupensis robertsoni and analyze genetic differentiation of Oncomelania hupensis robertsoni.

methodsSamples were from 13 villages in Yunnan Province of China, with 30 Oncomelania hupensis snails per village, and the complete mitochondrial genome was sequenced. A comprehensive analysis of the genetic differentiation of Oncomelania hupensis robertsoni was conducted by constructing phylogenetic trees, calculating genetic distances, and analyzing identity.

resultsA total of 26 complete mitochondrial sequences were determined. The length of genome ranged from 15,181 to 15,187 bp, and the base composition of the genome was A+T (67.5%) and G+C content (32.5%). This genome encoded 37 genes, including 13 protein-coding genes, 2 rRNA genes, and 22 tRNA genes. The phylogenetic trees and identity analysis confirmed that Oncomelania hupensis robertsoni was subdivided into Oncomelania hupensis robertsoni Yunnan strain and Sichuan strain, with a genetic distance of 0.0834. Oncomelania hupensis robertsoni Yunnan strain was further subdivided into two sub-branches, corresponding to "Yunnan North" and "Yunnan South", with a genetic distance of 0.0216, and the samples exhibited over 97% identity.

conclusionOncomelania hupensis robertsoni is subdivided into Oncomelania hupensis robertsoni Yunnan strain and Sichuan strain. Oncomelania hupensis robertsoni Yunnan strain exhibits a higher level of genetic identity and clear north-south differentiation. This work reported the first mitochondrial genome of Oncomelania hupensis robertsoni Yunnan strain, which could be used as an important reference genome for Oncomelania hupensis, and also provide the important information for explaining the distribution pattern of Oncomelania hupensis robertsoni and control of Schistosoma japonicum.

Indexed as

Genome, MitochondrialPhylogenySnailsAnimalsBase CompositionChinaDNA, MitochondrialGenetic VariationSchistosoma japonicumDNA, Mitochondrial

Identifiers

PMID39591469
PMCPMC11630586

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.