Evidence map›Paper›PMID 39590716›Full record

ArticleJournal of fungi (Basel, Switzerland)2024

Ppn2 Polyphosphatase Improves the Ability of

Irina A Eliseeva, Lubov Ryazanova, Larisa Ledova, Anton Zvonarev, Airat Valiakhmetov, Maria Suntsova, Aleksander Modestov, Anton Buzdin, Dmitry N Lyabin, Ivan V Kulakovskiy and 1 more

Abstract read
In one paragraph

Article in Journal of fungi (Basel, Switzerland), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Irina A EliseevaInstitute of Protein Research, Russian Academy of Sciences, Institutskaya 4, Pushchino 142290, Russia.
Lubov RyazanovaFederal Research Center "Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences", Skryabin Institute of Biochemistry and Physiology of Microorganisms, pr. Nauki 5, Pushchino 142290, Russia.
Larisa LedovaFederal Research Center "Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences", Skryabin Institute of Biochemistry and Physiology of Microorganisms, pr. Nauki 5, Pushchino 142290, Russia.
Anton ZvonarevFederal Research Center "Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences", Skryabin Institute of Biochemistry and Physiology of Microorganisms, pr. Nauki 5, Pushchino 142290, Russia.ORCID 0000-0001-7330-0678
Airat ValiakhmetovFederal Research Center "Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences", Skryabin Institute of Biochemistry and Physiology of Microorganisms, pr. Nauki 5, Pushchino 142290, Russia.
Maria SuntsovaEndocrinology Research Center, Dmitriya Ulyanova 11, Moscow 117036, Russia.
Aleksander ModestovEndocrinology Research Center, Dmitriya Ulyanova 11, Moscow 117036, Russia.ORCID 0000-0002-1531-7161
Anton BuzdinEndocrinology Research Center, Dmitriya Ulyanova 11, Moscow 117036, Russia.
Dmitry N LyabinInstitute of Protein Research, Russian Academy of Sciences, Institutskaya 4, Pushchino 142290, Russia.
Ivan V KulakovskiyInstitute of Protein Research, Russian Academy of Sciences, Institutskaya 4, Pushchino 142290, Russia.ORCID 0000-0002-6554-8128
Tatiana KulakovskayaFederal Research Center "Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences", Skryabin Institute of Biochemistry and Physiology of Microorganisms, pr. Nauki 5, Pushchino 142290, Russia.ORCID 0000-0001-8556-809X

Funding

Ministry of Science and Higher Education of the Russian Federation Agreement No. 075-15-2022-310 dated April 20, 2022Russian Science Foundation 19-74-20129
6 · The paper itself

Abstract

Inorganic polyphosphates and respective metabolic pathways and enzymes are important factors for yeast active growth in unfavorable conditions. However, particular proteins of polyphosphate metabolism remain poorly explored in this context. Here we report biochemical and transcriptomic characterization of the CRN/PPN2 yeast strain (derived from Ppn1-lacking CRN strain) overexpressing poorly studied Ppn2 polyphosphatase. We showed that Ppn2 overexpression significantly reduced lag phase in the alkaline medium presumably due to the ability of Ppn2 to efficiently hydrolyze inorganic polyphosphates and thus neutralize hydroxide ions in the cell. With RNA-Seq, we compared the molecular phenotypes of CRN/PPN2 and its parent CRN strain grown in YPD or alkaline medium and detected transcriptomic changes induced by Ppn2 overexpression and reflecting the adaptation to alkaline conditions. The core set of upregulated genes included several genes with a previously unknown function. Respective knockout strains (∆

Indexed as

CYSTM proteinsKOHpolyphosphatasepolyphosphatePpn2RNA-SeqSaccharomyces cerevisiae

Identifiers

PMID39590716
PMCPMC11595888

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.