Evidence map›Paper›PMID 39589145›Full record

ArticleThe Journal of infectious diseases2025

Genomic Analysis of Global Mycobacterium abscessus Isolates Reveals Ongoing Evolution of Drug Resistance-Associated Genes.

Tingting Yang, Kylie E Beach, Chendi Zhu, Mingyu Gan, Wenli Wang, Hongjuan Zhou, Lijun Peng, Shanshan Wang, Long Cai, Weimin Li and 7 more

Abstract read
In one paragraph

Article in The Journal of infectious diseases, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Molecular Mechanisms Underlying Antimicrobial Resistance in Mycobacteria.International journal of molecular sciences · 2026
    Review
  3. Novel Hawai'i and Pacific Island circulating clusters ofApplied and environmental microbiology · 2026
    Article
  4. Article
  5. Article
  6. Expanding the scope ofbioRxiv : the preprint server for biology · 2025
    Article
  7. Article
  8. Article
  9. Population genetic analysis of clinicalFrontiers in cellular and infection microbiology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Tingting YangClinical Laboratory Experiment Center, Hangzhou Red Cross Hospital, Zhejiang, China.ORCID 0000-0002-8585-0922
Kylie E BeachDepartment of Pathology, University of Utah, Salt Lake City, Utah.
Chendi ZhuBeijing Chest Hospital, Capital Medical University, Beijing, China.
Mingyu GanDepartment of Genetics, University of North Carolina at Chapel Hill.
Wenli WangClinical Laboratory Experiment Center, Hangzhou Red Cross Hospital, Zhejiang, China.ORCID 0009-0008-4658-6648
Hongjuan ZhouClinical Laboratory Experiment Center, Hangzhou Red Cross Hospital, Zhejiang, China.ORCID 0009-0005-8911-4796
Lijun PengClinical Laboratory Experiment Center, Hangzhou Red Cross Hospital, Zhejiang, China.ORCID 0009-0006-6345-1425
Shanshan WangClinical Laboratory Experiment Center, Hangzhou Red Cross Hospital, Zhejiang, China.ORCID 0000-0001-7364-768X
Long CaiClinical Laboratory Experiment Center, Hangzhou Red Cross Hospital, Zhejiang, China.ORCID 0000-0001-6585-2448
Weimin LiBeijing Chest Hospital, Capital Medical University, Beijing, China.ORCID 0000-0003-2796-9009
Jordan B DavisARUP Laboratories, Salt Lake City, Utah.
Nico CicchettiDepartment of Pathology, University of Utah, Salt Lake City, Utah.
E Susan SlechtaBiofire Diagnostics, Salt Lake City, Utah.
Adam BarkerDepartment of Pathology, University of Utah, Salt Lake City, Utah.
Salika M ShakirDepartment of Pathology, University of Utah, Salt Lake City, Utah.
Allison F CareyDepartment of Pathology, University of Utah, Salt Lake City, Utah.ORCID 0000-0003-0937-4976
Qingyun LiuDepartment of Genetics, University of North Carolina at Chapel Hill.ORCID 0000-0002-2284-5050

Funding

Parallel phenotyping to dissect genetic determinants of bacterial strain diversityDP2AI171122 · NIAID · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Allison Carey · 2022 to 2026
$2.4M
Hangzhou Agricultural and Social Development Scientific Research Project 202204B02Health Commission of Zhejiang Province 2023RC065National Natural Science Foundation of China 32300507NIAID NIH HHS DP2 AI171122NIH HHS DP2AI171122University of Utah Office of the Vice PresidentZhejiang Basic Public Welfare Research Project LQ24C060008Zhejiang Basic Public Welfare Research Project LY21H100001
6 · The paper itself

Abstract

Mycobacterium abscessus (MAB) is intrinsically resistant to many antibiotics, but the evolution of acquired drug resistance is poorly understood. We analyzed published genomes of 5617 clinical MAB isolates from 20 countries and searched for signals of ongoing evolution in 35 drug resistance-associated genes. Of these, we found 14 genes that were subject to positive selection, and we identified novel mutational sites under selection. Among these, the erm(41) V80I mutation arose exclusively in strains with erm(41) 28T and affected 50.5% (1750/3465) of subsp abscessus isolates. The study provided evidence that MAB is evolving mutations in drug resistance-associated genes, and further research is needed to understand the functional consequences of these mutations.

Indexed as

Drug Resistance, BacterialEvolution, MolecularGenome, BacterialMycobacterium abscessusMycobacterium Infections, NontuberculousAnti-Bacterial AgentsGenomicsHumansMicrobial Sensitivity TestsMutationSelection, GeneticAnti-Bacterial Agentsdrug resistanceevolutionmacrolideMycobacterium abscessusnatural selection

Identifiers

PMID39589145
PMCPMC12128065

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.