Evidence map›Paper›PMID 39587307›Full record

ReviewNature reviews. Genetics2025

The maternal-to-zygotic transition: reprogramming of the cytoplasm and nucleus.

Mina L Kojima, Caroline Hoppe, Antonio J Giraldez

Abstract readReview
In one paragraph

Review in Nature reviews. Genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed.

  1. Review
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  5. Review
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  9. Article
  10. Single-molecule mbioRxiv : the preprint server for biology · 2026
    Article
  11. Bridging maternal effects and epitranscriptomics: A novel perspective in developmental biology.Developmental dynamics : an official publication of the American Association of Anatomists · 2026
    Review
  12. Article
  13. Review
  14. Article
  15. Review
  16. The multi-omics regulatory landscape of human early embryogenesis.Cellular and molecular life sciences : CMLS · 2026
    Review
  17. Article
  18. Review
  19. Maternal IntS11 primes embryonic totipotency by organizing early zygotic transcription initiation.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Mina L Kojima *Department of Genetics, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-3387-8608
Caroline Hoppe *Department of Genetics, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0001-5600-309X
Antonio J GiraldezDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA. antonio.giraldez@yale.edu.ORCID http://orcid.org/0000-0002-6823-137X

Funding

Molecular mechanisms of the maternal to zygotic transitionR35GM122580 · NIGMS · YALE UNIVERSITY · PI Antonio J Giraldez · 2017 to 2026
$8.1M
Deciphering the regulatory code that specifies different cell fates in development using single cell genomicsR01HD100035 · NICHD · YALE UNIVERSITY · PI GIRALDEZ, ANTONIO J, KRISHNASWAMY, SMITA · 2020 to 2024
$2.8M
Multimodal Analysis of the Genome Architecture Using Expansion MicroscopyR01HG012969 · NHGRI · YALE UNIVERSITY · PI Joerg Bewersdorf, Antonio J Giraldez · 2024 to 2026
$2.1M
Mechanisms Regulating Chromatin Organization and Epigenetic MemoryR01HD119238 · NICHD · YALE UNIVERSITY · PI Antonio J Giraldez · 2025 to 2026
$1.2M
NICHD NIH HHS R01 HD100035NICHD NIH HHS R01 HD119238NIGMS NIH HHS R35 GM122580
6 · The paper itself

Abstract

A fertilized egg is initially transcriptionally silent and relies on maternally provided factors to initiate development. For embryonic development to proceed, the oocyte-inherited cytoplasm and the nuclear chromatin need to be reprogrammed to create a permissive environment for zygotic genome activation (ZGA). During this maternal-to-zygotic transition (MZT), which is conserved in metazoans, transient totipotency is induced and zygotic transcription is initiated to form the blueprint for future development. Recent technological advances have enhanced our understanding of MZT regulation, revealing common themes across species and leading to new fundamental insights about transcription, mRNA decay and translation.

Indexed as

Cell NucleusCellular ReprogrammingCytoplasmZygoteAnimalsEmbryonic DevelopmentFemaleGene Expression Regulation, DevelopmentalHumansOocytes

Identifiers

PMID39587307
PMCPMC11928286

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.