Evidence map›Paper›PMID 39587306›Full record

ReviewNature reviews. Genetics2025

The lives of cells, recorded.

Amjad Askary, Wei Chen, Junhong Choi, Lucia Y Du, Michael B Elowitz, James A Gagnon, Alexander F Schier, Sophie Seidel, Jay Shendure, Tanja Stadler and 1 more

Abstract readReview
In one paragraph

Review in Nature reviews. Genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. bioRxiv : the preprint server for biology · 2026
    Article
  9. Genome-wide chromatin recording resolves dynamic cell state changes.bioRxiv : the preprint server for biology · 2026
    Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Amjad Askary *Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0002-2913-8498
Wei Chen *Department of Genome Sciences, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-5255-4166
Junhong Choi *Department of Genome Sciences, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0001-9291-5977
Lucia Y Du *Biozentrum, University of Basel, Basel, Switzerland.ORCID http://orcid.org/0000-0003-0151-3783
Michael B ElowitzAllen Discovery Center for Cell Lineage Tracing, Seattle, WA, USA. melowitz@caltech.edu.ORCID http://orcid.org/0000-0002-1221-0967
James A GagnonSchool of Biological Sciences, University of Utah, Salt Lake City, UT, USA. james.gagnon@utah.edu.ORCID http://orcid.org/0000-0003-3978-6058
Alexander F SchierBiozentrum, University of Basel, Basel, Switzerland. alex.schier@unibas.ch.ORCID http://orcid.org/0000-0001-7645-5325
Sophie Seidel *Department of Biosystems Science and Engineering, ETH Zürich, Basel, Switzerland.ORCID http://orcid.org/0000-0002-4484-9888
Jay ShendureDepartment of Genome Sciences, University of Washington, Seattle, WA, USA. shendure@uw.edu.ORCID http://orcid.org/0000-0002-1516-1865
Tanja StadlerDepartment of Biosystems Science and Engineering, ETH Zürich, Basel, Switzerland. tanja.stadler@bsse.ethz.ch.ORCID http://orcid.org/0000-0001-6431-535X
Martin Tran *Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID http://orcid.org/0000-0001-9882-7230

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Cellular and molecular mechanisms of vertebrate testis homeostasisR35GM142950 · NIGMS · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI James Alan Gagnon · 2021 to 2026
$2.5M
Synthetic recording and in situ readout of cell lineage and molecular history in mammalian retinaR00EY031782 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ASKARY, AMJAD · 2022 to 2024
$747k
NCI NIH HHS P30 CA008748NEI NIH HHS R00 EY031782NIGMS NIH HHS R35 GM142950
6 · The paper itself

Abstract

A paradigm for biology is emerging in which cells can be genetically programmed to write their histories into their own genomes. These records can subsequently be read, and the cellular histories reconstructed, which for each cell could include a record of its lineage relationships, extrinsic influences, internal states and physical locations, over time. DNA recording has the potential to transform the way that we study developmental and disease processes. Recent advances in genome engineering are driving the development of systems for DNA recording, and meanwhile single-cell and spatial omics technologies increasingly enable the recovery of the recorded information. Combined with advances in computational and phylogenetic inference algorithms, the DNA recording paradigm is beginning to bear fruit. In this Perspective, we explore the rationale and technical basis of DNA recording, what aspects of cellular biology might be recorded and how, and the types of discovery that we anticipate this paradigm will enable.

Indexed as

DNAAlgorithmsAnimalsGenetic EngineeringHumansPhylogenySingle-Cell AnalysisDNA

Identifiers

PMID39587306
PMCPMC12184736

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.