Evidence map›Paper›PMID 39587195›Full record

ArticleScientific reports2024

The genome of the simultaneously hermaphroditic snail Lymnaea stagnalis reveals an evolutionary expansion of FMRFamide-like receptors.

J M Koene, D J Jackson, Y Nakadera, N Cerveau, M A Madoui, B Noel, V Jamilloux, J Poulain, K Labadie, C Da Silva and 7 more

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

J M Koene *Ecology and Evolution, Amsterdam Institute for Life and Environment (A-LIFE), Vrije Universiteit, De Boelelaan 1108, 1081 HZ, Amsterdam, The Netherlands.ORCID 0000-0001-8188-3439
D J Jackson *Department of Geobiology, Georg-August University of Göttingen, Goldschmidtstr. 3, 37077, Göttingen, Germany.ORCID 0000-0001-9045-381X
Y NakaderaEcology and Evolution, Amsterdam Institute for Life and Environment (A-LIFE), Vrije Universiteit, De Boelelaan 1108, 1081 HZ, Amsterdam, The Netherlands.ORCID 0000-0002-6342-4586
N CerveauDepartment of Geobiology, Georg-August University of Göttingen, Goldschmidtstr. 3, 37077, Göttingen, Germany.ORCID 0000-0003-1962-3227
M A MadouiSEPIA, Institut François Jacob, Commissariat à l'Energie Atomique et aux Energies Alternatives (CEA), Université Paris Saclay, Fontenay-aux-Roses, France.
B NoelGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Université Paris-Saclay, 91057, Evry, France.
V JamillouxURGI, INRAE, Université Paris-Saclay, Route de Saint-Cyr, 78026, Versailles, France.ORCID 0000-0002-6898-4910
J PoulainGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Université Paris-Saclay, 91057, Evry, France.
K LabadieGenoscope, Institut François Jacob, CEA, CNRS, Université Paris-Saclay, 91057, Evry, France.
C Da SilvaGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Université Paris-Saclay, 91057, Evry, France.ORCID 0000-0002-7618-7831
A DavisonSchool of Life Sciences, University Park, University of Nottingham, Nottingham, NG7 2RD, UK.ORCID 0000-0003-2554-8585
Z P FengDepartment of Physiology, University of Toronto, 1 King's College, Toronto, ON, M5S 1A8, Canada.ORCID 0000-0002-2454-4462
C M AdemaDepartment of Biology, Center for Evolutionary and Theoretical Immunology, University of New Mexico, Albuquerque, NM, 87112, USA.ORCID 0000-0002-6250-5499
C KloppINRAE, Sigenae, BioInfoMics MIAT, UR875, INRAE, Castanet-Tolosan, France.ORCID 0000-0001-7126-5477
J M AuryGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Université Paris-Saclay, 91057, Evry, France.ORCID 0000-0003-1718-3010
P WinckerGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Université Paris-Saclay, 91057, Evry, France.
M A CoutellecDECOD (Ecosystem Dynamics and Sustainability), L'Institut Agro, Ifremer, INRAE, 35042, Rennes, France. marie-agnes.coutellec@inrae.fr.ORCID 0000-0001-6113-3788

Funding

Deutsche Forschungsgemeinschaft DFG project #528314512Genoscope, CEA, and France Génomique ANR-10-INBS-09-08Open Competition Grant OCENW.KLEIN.062
6 · The paper itself

Abstract

The great pond snail Lymnaea stagnalis has served as a model organism for over a century in diverse disciplines such as neurophysiology, evolution, ecotoxicology and developmental biology. To support both established uses and newly emerging research interests we have performed whole genome sequencing (avg.176 × depth), assembly and annotation of a single individual derived from an inbred line. These efforts resulted in a final assembly of 943 Mb (L50 = 257; N50 = 957,215) with a total of 22,499 predicted gene models. The mitogenome was found to be 13,834 bp long and similarly organized as in other lymnaeid species, with minor differences in location of tRNA genes. As a first step towards understanding the hermaphroditic reproductive biology of L. stagnalis, we identified molecular receptors, specifically nuclear receptors (including newly discovered 2xDNA binding domain-NRs), G protein-coupled receptors, and receptor tyrosine kinases, that may be involved in the cellular specification and maintenance of simultaneously active male and female reproductive systems. A phylogenetic analysis of one particular family of GPCRs (Rhodopsin neuropeptide FMRFamide-receptor-like genes) shows a remarkable expansion that coincides with the occurrence of simultaneous hermaphroditism in the Euthyneura gastropods. As some GPCRs and NRs also showed qualitative differences in expression in female (albumen gland) and male (prostate gland) organs, it is possible that separate regulation of male and female reproductive processes may in part have been enabled by an increased abundance of receptors in the transition from a separate-sexed state to a hermaphroditic condition. These findings will support efforts to pair receptors with their activating ligands, and more generally stimulate deeper insight into the mechanisms that underlie the modes of action of compounds involved in neuroendocrine regulation of reproduction, induced toxicity, and development in L. stagnalis, and molluscs in general.

Indexed as

FMRFamideLymnaeaAnimalsEvolution, MolecularFemaleGenomeHermaphroditic OrganismsMalePhylogenyFMRFamideGene expansionGPCRsMolluscan genomeNuclear receptorsSimultaneous hermaphroditism

Identifiers

PMID39587195
PMCPMC11589774

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.