Evidence map›Paper›PMID 39587101›Full record

ArticleNature communications2024

Features of membrane protein sequence direct post-translational insertion.

Ilya A Kalinin, Hadas Peled-Zehavi, Alon B D Barshap, Shai A Tamari, Yarden Weiss, Reinat Nevo, Nir Fluman

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ilya A Kalinin *Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel.
Hadas Peled-Zehavi *Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0001-8169-5104
Alon B D BarshapDepartment of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel.
Shai A TamariDepartment of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel.ORCID 0009-0007-1964-7989
Yarden WeissDepartment of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel.ORCID 0009-0000-0610-4482
Reinat NevoDepartment of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel.ORCID 0009-0000-3327-4022
Nir FlumanDepartment of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel. nir.fluman@weizmann.ac.il.ORCID 0000-0001-9909-0779

Funding

Israel Science Foundation (ISF) 2207/21Israel Science Foundation (ISF) 2208/21
6 · The paper itself

Abstract

The proper folding of multispanning membrane proteins (MPs) hinges on the accurate insertion of their transmembrane helices (TMs) into the membrane. Predominantly, TMs are inserted during protein translation, via a conserved mechanism centered around the Sec translocon. Our study reveals that the C-terminal TMs (cTMs) of numerous MPs across various organisms bypass this cotranslational route, necessitating an alternative posttranslational insertion strategy. We demonstrate that evolution has refined the hydrophilicity and length of the C-terminal tails of these proteins to optimize cTM insertion. Alterations in the C-tail sequence disrupt cTM insertion in both E. coli and human, leading to protein defects, loss of function, and genetic diseases. In E. coli, we identify YidC, a member of the widespread Oxa1 family, as the insertase facilitating cTMs insertion, with C-tail mutations disrupting the productive interaction of cTMs with YidC. Thus, MP sequences are fine-tuned for effective collaboration with the cellular biogenesis machinery, ensuring proper membrane protein folding.

Indexed as

Escherichia coliEscherichia coli ProteinsMembrane ProteinsMembrane Transport ProteinsProtein Processing, Post-TranslationalAmino Acid SequenceElectron Transport Complex IVHumansHydrophobic and Hydrophilic InteractionsMitochondrial ProteinsMutationNuclear ProteinsProtein BiosynthesisProtein FoldingElectron Transport Complex IVEscherichia coli ProteinsMembrane ProteinsMembrane Transport ProteinsMitochondrial ProteinsNuclear ProteinsOXA1 proteinYIDC protein, E coli

Identifiers

PMID39587101
PMCPMC11589881

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.