Evidence map›Paper›PMID 39585984›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Metagenomic study of lake microbial mats reveals protease-inhibiting antiviral peptides from a core microbiome member.

Chandrashekhar Padhi, Christopher M Field, Clarissa C Forneris, Dominik Olszewski, Amy E Fraley, Ioana Sandu, Thomas A Scott, Jakob Farnung, Hans-Joachim Ruscheweyh, Ananta Narayan Panda and 7 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Biosynthesis of Macrocyclic Peptides by Formation and Crosslinking ofbioRxiv : the preprint server for biology · 2025
    Article
  7. Characterization of S-glycosylated glycocins containing three disulfides.Journal of industrial microbiology & biotechnology · 2024
    Article
  8. Metagenomic study of lake microbial mats reveals protease-inhibiting antiviral peptides from a core microbiome member.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Chandrashekhar PadhiInstitute of Microbiology, Eidgenössische Technische Hochschule Zurich, Zurich 8093, Switzerland.ORCID 0009-0009-1305-0377
Christopher M FieldInstitute of Microbiology, Eidgenössische Technische Hochschule Zurich, Zurich 8093, Switzerland.ORCID 0000-0002-6434-3745
Clarissa C FornerisInstitute of Microbiology, Eidgenössische Technische Hochschule Zurich, Zurich 8093, Switzerland.ORCID 0000-0001-5222-2404
Dominik OlszewskiDepartment of Molecular Life Sciences, University of Zurich, Zurich 8057, Switzerland.ORCID 0000-0001-5389-4034
Amy E FraleyInstitute of Microbiology, Eidgenössische Technische Hochschule Zurich, Zurich 8093, Switzerland.
Ioana SanduInstitute of Microbiology, Eidgenössische Technische Hochschule Zurich, Zurich 8093, Switzerland.ORCID 0000-0003-4696-0683
Thomas A ScottInstitute of Microbiology, Eidgenössische Technische Hochschule Zurich, Zurich 8093, Switzerland.
Jakob FarnungLaboratory of Organic Chemistry, ETH Zurich, Zurich 8093, Switzerland.ORCID 0000-0002-4619-3421
Hans-Joachim RuscheweyhInstitute of Microbiology, Eidgenössische Technische Hochschule Zurich, Zurich 8093, Switzerland.
Ananta Narayan PandaSchool of Biotechnology, Kalinga Institute of Industrial Technology University, Bhubaneswar, Odisha 751024, India.ORCID 0000-0003-3752-3457
Annette OxeniusInstitute of Microbiology, Eidgenössische Technische Hochschule Zurich, Zurich 8093, Switzerland.ORCID 0000-0002-2079-2354
Urs F GreberDepartment of Molecular Life Sciences, University of Zurich, Zurich 8057, Switzerland.ORCID 0000-0003-2278-120X
Jeffrey W BodeLaboratory of Organic Chemistry, ETH Zurich, Zurich 8093, Switzerland.ORCID 0000-0001-8394-8910
Shinichi SunagawaInstitute of Microbiology, Eidgenössische Technische Hochschule Zurich, Zurich 8093, Switzerland.ORCID 0000-0003-3065-0314
Vishakha RainaSchool of Biotechnology, Kalinga Institute of Industrial Technology University, Bhubaneswar, Odisha 751024, India.ORCID 0000-0001-6095-7494
Mrutyunjay SuarSchool of Biotechnology, Kalinga Institute of Industrial Technology University, Bhubaneswar, Odisha 751024, India.
Jörn PielInstitute of Microbiology, Eidgenössische Technische Hochschule Zurich, Zurich 8093, Switzerland.ORCID 0000-0002-2282-8154

Funding

EC | Horizon Europe | Excellent Science | HORIZON EUROPE Marie Sklodowska-Curie Actions (MSCA) 897571Peter und Traudl Engelhorn Stiftung (Peter and Traudl Engelhorn Foundation) n/aPromedica Stiftung 1-001369-000Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (SNF) 205320_185077Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (SNF) 205320_219638Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (SNF) 310030_212802
6 · The paper itself

Abstract

In contrast to the large body of work on bioactive natural products from individually cultivated bacteria, the chemistry of environmental microbial communities remains largely elusive. Here, we present a comprehensive bioinformatic and functional study on a complex and interaction-rich ecosystem, algal-bacterial (microbial) mats of Lake Chilika in India, Asia's largest brackish water body. We report the bacterial compositional dynamics over the mat life cycle, >1,300 reconstructed environmental genomes harboring >2,200 biosynthetic gene clusters (BGCs), the successful cultivation of a widespread core microbiome member belonging to the genus

Indexed as

Antiviral AgentsLakesMetagenomicsMicrobiotaBacteriaIndiaMetagenomeMultigene FamilyPeptidesProtease InhibitorsAntiviral AgentsPeptidesProtease Inhibitorsantiviral compoundsmetagenomicsnatural productspeptidesprotease inhibitors

Identifiers

PMID39585984
PMCPMC11626197

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.